Corvus cornix (hooded crow): 104690158
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Entry
104690158 CDS
T03546
Symbol
HERC4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104690158 (HERC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccw04121
]
104690158 (HERC4)
Enzymes [BR:
ccw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
104690158 (HERC4)
Ubiquitin system [BR:
ccw04121
]
Ubiquitin ligases (E3)
HECT type E3
104690158 (HERC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
HECT
RCC1_2
Motif
Other DBs
NCBI-GeneID:
104690158
NCBI-ProteinID:
XP_039409939
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All DBs
Position
6:complement(31822181..31851866)
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AA seq
1056 aa
AA seq
DB search
MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFLNKRVRDVGCGLRHTVFVLDDGTVYTCGC
NDLGQLGHEKARKRPEHVGALDAQNIVAVSCGEAHTLALNDKGQVYAWGLATDGQLGLPG
TEECIRVPRNIKSLSEIQIVQVACGYYHSLALSKGSEVFSWGQNKYGQLGLGYEYKKQTS
PQMIKSLLGIPFAQIAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDDNDRYVPTLLKSLR
SQKVVHICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSVVTQIT
CGRQHTTAFVPSSGRIYSFGLGGNGQLGTGTTSNRKSPFTVKGNWIPYSTQCPMSTDNEE
CYCVKRIFSGGDQSFAHYFYPQNMVPPDDFRYPDLLKQIWTVNEMFIQRLLSFPSGRLPV
EIANEIDGTFSSAGCLNGSFLALSNDDHYKTSTRFSGVDMNAARLLFHKLIQPEHTHISQ
QVAASLEKNLIPKLTSSLPDVEALRLYLTLPECPLMSDENNFTTLAIPFGAAILNLEKAP
LKVLENWWSLLEPPLFLKIVELYKDVVVHLLKLCKMGLPPADRRILTNFLHTAFRVLEIL
HRVNERGQVIQYDRFYIHEIQDLIDIRNDYANWFQQQVLGMDVNHGLTELTDIPVIICTY
PFVFDAQAKTTLLQTDAIIQMQMAVDQAHRQNLSSLFLPVFESVNPCLILMVRRDNIVGD
AVEVLRKTKNVDYKKPLKVIFVGEEAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEESRL
IWFSDKTFEDSDLFHLIGVVCGLAIYNFTIVDLHFPLALYKKLLNKKPSLDDLKELMPDV
GRGMQQLLDYPEDDIEEAFCLNFTITVENFGTTEIKELVPKGADIPVVKQNRQDFVDAYV
DYIFNRSVASLYSAFHEGFHKVCGGKVLQLFQPSELQAMVIGNTNYDWKELEKNTEYKGE
YWADHPTIKIFWEVFHELSLEKKKQFLLFLTGSDRIPILGMKCLKLVIQPTGGGEDYLPV
AHTCFNLLDLPKYTDKETLKSKLIQAIDHYEGFSLV
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgctggggcaatgcatcttttggacagcttggattgggtggaattgatgaagag
attgttttagaacccagaaaaagtgactttttcctaaataaaagggtcagagatgtagga
tgtggactgagacatactgtttttgtcctggatgatgggactgtttatacgtgtggatgc
aacgatctaggacaactagggcacgaaaaagccaggaaaagacctgagcacgttggtgca
ctggatgcccaaaatattgtagctgtatcatgtggagaagcccacactcttgcattaaat
gacaaaggtcaggtatatgcttggggtctggctactgatggacagcttggcttgcctgga
acagaggaatgcatcagagtgcccagaaatattaaaagcttatcagagatccaaattgtt
caagttgcttgtggttattatcactcgctagcactatcaaaaggaagtgaagtgttttcc
tggggacaaaacaaatatggccagctgggcttaggttatgagtataagaaacaaacctca
ccacaaatgattaaatctctgctgggaatcccttttgcacagattgctgcaggaggagct
catagttttgtactaactctttctggagccatctttggatggggacgcaacaaatttggg
cagctgggtcttaatgatgataatgacaggtatgttcctacgctgctgaagtccctgaga
agtcagaaggttgttcatatatgttgtggagaagatcatactgctgcccttacgaaggaa
ggtggggtttttacatttggagctggaggctatggtcagttgggtcataactctaccagc
catgagataaatccaaggaaagtttttgagcttatgggaagtgttgtcacgcaaatcacc
tgtggcaggcagcacaccactgcattcgtcccttcttctggaagaatttattcttttgga
ctcggaggtaatgggcaattaggtactgggaccaccagtaacaggaaaagtcccttcaca
gtgaaaggaaactggattccctatagtactcaatgcccaatgagcacagacaatgaggag
tgctactgtgtaaagagaattttctctggtggggaccaaagttttgcacactacttttat
ccacagaacatggtgccaccagatgattttaggtatcctgaccttttgaagcagatctgg
actgtgaatgaaatgtttattcaaagattgctgagtttcccatctggaagacttcctgta
gagatagctaatgaaattgatggaacgttctcctcagctgggtgcctgaatgggagcttt
ttggcattgagcaatgatgatcattacaaaaccagcactagattctcaggggttgatatg
aatgctgctagactactctttcacaaactcatacaacctgagcatactcacatatcacaa
caggtggcagctagtttggaaaagaaccttattcccaaattgaccagctccttaccagat
gtcgaagctttgaggctgtatctcactctaccagagtgcccactgatgagtgatgaaaac
aatttcacaacgttagctattccttttggagcagctattctgaacctagaaaaagctcct
ctgaaagttcttgaaaattggtggtctctacttgaacctcccttgttcctcaagatagtg
gaactctacaaggatgtcgtagtgcaccttttgaagttgtgcaagatgggccttccacct
gctgacagaagaatacttaccaatttcctacacacagccttcagagttctggaaatactg
cacagagtaaatgaaagaggacaagttatacagtatgacagattttacattcatgagata
caagatttgatagatatcagaaatgactatgccaactggttccagcagcaggtactggga
atggatgtcaaccatggattaactgagttaacagatattcctgttataatttgcacatac
ccatttgtatttgatgcccaggcaaagacaactctcttgcaaacagatgcaatcatacag
atgcagatggctgtcgatcaggcccacaggcagaacttgtcttctcttttcctgccagta
tttgaatctgtcaatccatgcctgatactaatggtccggagggacaacattgtaggggac
gctgtggaggtcctaaggaaaacaaagaatgtagactacaagaagccactcaaggttata
tttgtaggggaggaagctgttgatgctggtggtgttcgcaaagaattttttttgctcatc
atgagggagttgctagatcccaagtatggaatgttcaggtattatgaggagtccaggctg
atctggttctctgataagacctttgaagacagtgacttgtttcatttgattggtgttgtc
tgtgggctagcaatatataattttactattgtagaccttcattttcctctggctttgtac
aaaaagctattgaataagaaaccatccctggatgacttaaaagaattgatgccagatgtt
ggcaggggaatgcaacagctactggactatccagaggatgacatagaagaagcattttgt
cttaattttactatcactgtggaaaattttggtacaacagaaattaaggagcttgttcct
aaaggtgctgacattcctgtagtcaaacagaataggcaagattttgtagatgcatatgtg
gattacatcttcaatagatctgtggcttccttatacagtgcattccatgaaggcttccac
aaagtgtgtggaggtaaagttcttcagctcttccagcccagtgagttgcaggcaatggtg
attgggaacacaaattatgactggaaagagctggagaagaatacagaatacaaaggagaa
tactgggcagaccatcctacaattaaaatattctgggaggtttttcatgagttgtctttg
gagaagaaaaaacagtttttgttgtttctgacaggcagtgatcggattccaattcttgga
atgaagtgtctcaaactggtcatccagccaacaggaggaggagaagattatctgccggta
gctcacacttgctttaatcttcttgatcttccaaaatacacagataaagaaaccctaaaa
tctaagttgatccaggctatagaccactatgaaggtttcagtttagtataa
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