Corvus cornix (hooded crow): 104690466
Help
Entry
104690466 CDS
T03546
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccw03041
]
104690466
Enzymes [BR:
ccw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104690466
Spliceosome [BR:
ccw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104690466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
AAA_19
HA2_N
Ank_2
nSTAND3
AAA_22
ATPase
Ank_4
AAA_16
PhoH
Ank
ResIII
AAA_23
AAA_7
AAA_30
AAA_29
Sigma54_activat
SRP54
Motif
Other DBs
NCBI-GeneID:
104690466
NCBI-ProteinID:
XP_010399607
LinkDB
All DBs
Position
Z:45161041..45194218
Genome browser
AA seq
1427 aa
AA seq
DB search
MSRPRNVPPRQSGGGTAGSGAPPAPGRGRGGRGLRDIRVDEEVEIAVNLALERFRYGEDR
EMEFPSSFTRTERAFVHRLCHSLGLISKSKGKGTNRYLTVRKKDGSELKRAVMTCALTPG
TKHAVHTLIRNFPVTNKERTELLPKTERGNAYAVESENKEVNKTSGRLSDGIPQVPVKRG
ESEFDSFRQSLPVFEKQEEIVKIIKGHKVVLIVGETGSGKTTQIPQFILDDCHRNGTPCR
IFCTQPRRLAALAVAERVAAERREKIGQTVGYQIRLESRVSPKTLVTFCTNDMLLRTLMA
GDSTLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQSHANLKLIISSAALDADLFIRYFGC
CPVIHIQGRPFEVKEMFLEDILRSTGYTNKGMVKYKKEKQQEEKQQSTLTEWCSTQESSS
KLEPERPRSVPRATEECYLLGDGGDIVFNQLTEKDVNCLEPWLIKEMDSCLSNIWLHKDI
DAFAQVFHLILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGASIHCRSSNGWM
AVDWARRFGQTEVVDLLESYSASAGFGNLDESSLVRTSGGDLSAEDRELLTAYHHSFDDE
KVDLDLIMHLLYNICHSCETGAILIFLPGYDEIVILRDRILFDDRRFADNAHRYQVFMLH
SNMQTLDQKKVLKSPPPGVRKIILSTNIAETSVTVSDVVFVIDSGKVKEKSFDALSCVTV
LRMGWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQSPELLRMPLQELCLHTKL
LAPSSCPVVDFLMKAPDPPPALIVKNALQMLKAIDAMDPWEDLTELGYHLTELPVEPHLG
KMVLYAVVLKCLDPVLTIACALACQDPFVLPTLASQKRAAMLCRKRFTAGTFSDHMVLLR
AFQAWQKARSDGWERAFCEKNFLSQATMQIIAGMRTQLLGQLRASGFVRARGGADIRDVN
TNSENWAVIKAALVAGMYPNLVHVDRESLVLTEPKEKKVQFHPTSVLGQSQYNKIPPVNG
QSAAVQALPTDWLIYDEMTRAHRIANIRCCSAVTPITVALFCGPARLPSNALQASSSCQG
GGVSNDSSDSEMEDRKTSNVSLLKLDEWLHLKLDSEAAGMLLQLRQKWHSLFLRRMRAPS
KPWSQVDETTVRAITAVLSAEEQSAGLQQPSGIGQRPRPVTCEELPLASTWKSTNSRKST
AETEFSDSSNAEKVLMKSPRPMLHQPKQYKRRNILHSKQTSDDRSDQSSMKSADSSSFPS
PCASPSSPISGKGCRSPSPRQNMPVRYFIMKSSNLQNIDISQQKGIWSTTPSNEGKLNGA
FWESSLVYLIFSVQGSGCFQGFARMGSSIGREKSQDWGSAGFGGVFKVDWIRKESIPFQF
AHHLLNPWNDSKKVQISRDGQELEPQVGEQLLQLWDHIPLEGKSSTD
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcccaggaacgtcccgccgcggcagtccggcgggggcacggcgggctcgggc
gccccgcccgcgccgggccgcggccgaggcggcagaggtctgagggatatccgcgtggac
gaggaggtggagatcgcggtgaacctcgctctggagcggttccgctatggcgaagacagg
gaaatggaatttccgtcttctttcactagaacggaaagagcgtttgttcaccggctctgt
cattctcttggacttatatctaaaagtaaaggaaaaggaacaaatcgatacctaactgta
agaaaaaaggatggatcagaactaaaacgtgcagtaatgacttgtgccttaactcctggt
acaaaacacgctgttcatactttaattcggaattttcctgtcacaaataaagaacgaaca
gaacttctgcccaagacagaacgaggaaatgcctatgctgttgaatctgaaaacaaagaa
gtgaacaagacaagcggacgacttagcgatggtatcccccaggttcctgtgaaaagaggg
gaatcagagtttgattccttcaggcaatcactaccagtttttgaaaaacaggaagaaatt
gtcaaaataataaagggccataaagttgttttgattgtaggagagactggatcaggaaaa
actactcaaatcccccagtttattcttgatgactgtcacagaaatggaactccctgccgt
atattttgcactcagccgagacgtttggcagcacttgctgtggctgaaagagtggcagca
gaaagaagagaaaagattggccagacggttggttatcagatccgtttagaaagcagggtt
tctccaaagacactggtaaccttttgcactaatgacatgctgcttcgcacgctgatggca
ggagacagcaccctatctactgtgacacatgttattgtggatgaagtacatgagagggat
aggttcagtgacttcttgctaataaaactgagagatgtactgcaaagccacgctaattta
aaactaattatttctagtgctgctctagatgcagatctctttattaggtattttggatgt
tgcccagtaatacatatccaaggaagaccttttgaagttaaagagatgtttctggaggac
attttgcgaagcactgggtatacaaacaaagggatggtaaagtacaaaaaagagaagcag
caagaagaaaaacagcaaagcactcttactgagtggtgttctactcaagagagcagtagt
aagctggaacctgagagaccaagatctgtcccaagggcaactgaagagtgttatctgttg
ggtgatggtggtgacatagtatttaatcaactgactgaaaaagatgtgaactgccttgaa
ccatggttaataaaagagatggattcttgtctttctaacatctggttgcataaagatatt
gatgcctttgctcaggtgttccatctcattttaactgaaaatgtcagtgttgattatagg
cacagtgaaaccagtgcaactgcactaatgattgcttcagggagaggctttttgagtcaa
gtagagcagctgatcagtatgggagcaagtatccactgcagatcatctaatggctggatg
gctgtggactgggctaggcgctttggacagacagaggttgttgatctgttggaatcctac
agtgcttcagcaggatttggaaatctggatgaaagttcgctagtccgaacaagtggtggt
gaccttagtgcagaggacagagaactgttgacagcttatcatcacagctttgatgatgaa
aaagtggatctggacctcattatgcacttgctttataacatctgtcatagttgtgaaact
ggagcaattttaatatttcttcctggatatgatgagatagttatcctgagggaccgtatt
ctttttgatgacaggagatttgctgacaatgctcacagatatcaggttttcatgcttcat
tcaaatatgcagactttggatcagaagaaagtgcttaaaagtccacctcctggagtgcgc
aaaataattctttctactaatattgcagaaaccagcgtaacagtcagtgatgttgtattt
gtcattgactcaggcaaggtgaaagagaagtcttttgatgcactgagctgtgttacagtg
ctaagaatggggtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcgc
tgtcagcctggagtctgttttcgtctcttcagcaggctccgatttcagaatatgttggaa
tttcagtctccagaacttctacgaatgccacttcaggagctttgtttacacacaaaactt
ctggctccaagtagttgtccagttgttgactttcttatgaaagctcctgatcctccacca
gctttaattgtgaaaaatgctctgcaaatgctcaaggctatagatgccatggacccttgg
gaagatctcactgagcttggttaccacctcactgaattacctgtagagccacacctgggt
aaaatggtgttgtatgctgttgtgctgaagtgcctggatcctgttctgaccattgcctgt
gctcttgcctgccaagacccttttgtgctgcccacgctggcctcccagaagcgtgcagcc
atgctgtgcaggaagcgtttcactgcgggaacgttcagcgaccacatggtgcttctcagg
gcttttcaggcatggcaaaaggcacgcagtgatggctgggagagagccttctgtgaaaag
aacttcttgtcccaagccacaatgcaaatcatcgcaggaatgagaacacaattgcttggc
cagcttagagcctcaggttttgtgagagccagaggaggagctgatattagagatgttaat
actaactctgagaactgggctgtaattaaagctgccttagtggccgggatgtatcccaat
cttgtgcacgtagacagagaaagcctggtgttgactgaaccaaaggagaagaaagtgcaa
tttcatcctacctctgttcttggtcaatctcagtataacaagattcccccagtgaatggc
caaagtgcagctgttcaggcactccctacagactggcttatctatgacgaaatgacgaga
gctcacaggatagcaaacatcaggtgctgttctgctgtaacgcccatcactgtggcactc
ttctgcgggccagctaggttaccaagtaatgctttacaggcatcttcatcctgtcaagga
ggtggggtatctaatgatagcagtgacagtgagatggaggacagaaagacttctaatgta
tcactactgaagctagatgaatggctccacctcaaactggactctgaagctgctgggatg
ctgttgcaactcaggcagaagtggcacagtttgttcctgcgtcgtatgcgagctccttct
aaaccgtggtctcaagttgatgaaacaactgtaagagcaattacagctgttctgagtgct
gaagaacagtctgcaggtctgcagcagccttcaggaattggccagagaccaagacctgtg
acttgtgaagagcttcctttggcatctacatggaagtcaaccaacagcagaaaaagtaca
gcagaaactgaattctctgactcctctaatgctgaaaaagttctaatgaagtctccacgt
cccatgcttcatcagccaaagcagtacaaacgaagaaacattttgcactccaaacaaact
tcagatgacagatcagatcagtcatcaatgaagtctgcagacagcagtagcttccctagc
ccctgtgctagcccatcgtctccaatatctggaaagggttgcagatctccttcaccaaga
caaaatatgccagttcggtactttataatgaaaagtagcaacttgcaaaacattgatatt
tctcaacagaagggaatatggtccactacgccaagtaatgaagggaaactgaatggagcc
ttttgggagagcagcctggtttacttaatattttctgttcaagggtctggatgctttcag
ggttttgctagaatgggttcatcaataggacgtgagaaaagtcaagactggggatctgct
ggtttcggaggtgtgtttaaggtggactggatccgaaaagaaagcattccttttcagttt
gcacaccatttgctcaacccgtggaacgacagtaagaaagtacagataagtagagatggc
caggagctggaaccacaagttggagagcagttgctgcagctttgggaccatattcctttg
gaaggaaaaagctcaactgattaa
DBGET
integrated database retrieval system
