Corvus cornix (hooded crow): 104690884
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Entry
104690884 CDS
T03546
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03030
DNA replication
ccw03410
Base excision repair
ccw03420
Nucleotide excision repair
ccw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104690884 (RFC1)
03410 Base excision repair
104690884 (RFC1)
03420 Nucleotide excision repair
104690884 (RFC1)
03430 Mismatch repair
104690884 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccw03032
]
104690884 (RFC1)
03400 DNA repair and recombination proteins [BR:
ccw03400
]
104690884 (RFC1)
DNA replication proteins [BR:
ccw03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
104690884 (RFC1)
DNA repair and recombination proteins [BR:
ccw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
104690884 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
AAA_14
PTCB-BRCT
Rad17
BRCT_2
AAA_30
AAA_5
RuvB_N
AAA_17
AAA_7
RNA_helicase
AAA_33
AAA_16
AAA_18
nSTAND3
TIP49
AAA_19
Motif
Other DBs
NCBI-GeneID:
104690884
NCBI-ProteinID:
XP_039407227
LinkDB
All DBs
Position
4:50144518..50178774
Genome browser
AA seq
1116 aa
AA seq
DB search
MDIRKFFGVVPPGKRQECESVKKSERIKNGEGPSSGKKREKEAKVNNSPSEDDSKQKRTK
KKRRIIYDSDSEEEVSSVKKSKKSPEKKAATSKLGKVLKQDPVVYISETDEEDDFVNRRI
SLKPKENGTSAVGCPGTNIVKKGEVKPQAKSKPLSPVKQTPTSALDYFGTTSVQRSEKKL
VASKRKEPSQSRDSTLDDEAIARQLQLEEDSELERQLHEDEEFARTLAMLDETPQKKKAR
KDTEGEQTVLSISSSPNRTAGYKQSERVKATDSAGAAKNYSAKRQNKSEQLKEIAEKERG
AQNSLSREKAALGKEERTPPKKEKVSPKKTESISPEDSEKKRNYQAYRSFLNREGPKALG
SKEIPQGAENCLEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCG
QSKREKASTLGTKVIDEDGLFDLIRTMPGKKSKYELAAETEAEKVESRPKKTPQKTEAGK
RNFSPYKREANNKYKSTPEKGDTARSVKRETTAIRKLTDFKHHTVEEKEAPKPKGNLVSE
VNEDGTEKLLWVDKYKPVSLKAIIGQQGEQSCANKLLRWLRNWHKNTLEDGQAKPSKTGS
KDDGTSFKAALLSGPPGVGKTTTAALVCKELGYSYVELNASDTRSKNSLKEVVAESLNNT
SIKDFYSGASSSVSGKHVLIMDEVDGMAGNEDRGGIQELIALIRHTKIPIICMCNDRNHP
KIRSLVHYCLDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMQEIILAANHDIRQVLHNL
NMWCARDKSLTYDEAKTDASRAKKDIKLGPFDVVRKVFATGEEAVRMSLIDKSDLFFHDY
SLAPLFVQENYVHVKPAAAGGNLKKHLVLLSRAADSICDGDIVDKQIRSKQNWNLLPTQA
IYASVLPGELMRGYMSQFPVFPSWLGKFSSTGKHDRIIQELAMHMSLRTQTCKRTVNMEY
LSYLRDALVQPLKDFGADGVQQAITFMDSYCLMKEDVENIMEISMWGGKPSPFSKLDSKV
KAALTRAYNKEAHLTPYSLSSVKASKRQSGSAVTLDLSEDLNVEEMQSDEDEQDTVDSDA
MIKQKKVKSSKLTKKEKNEETTKKEGKRKEKTRHLE
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggaaattctttggtgttgtaccacctggaaagcgacaagaatgtgagtct
gtgaaaaagagtgaaagaattaaaaatggtgaaggaccctcaagtgggaagaaaagggaa
aaggaggctaaggtgaataattcacccagtgaagacgattccaaacaaaagcggacaaaa
aagaagagaagaataatctatgattcagattcagaagaggaggtgtcgtcagtgaaaaaa
tccaagaagtcacctgagaaaaaagcagctacttcaaaacttggtaaagttctaaagcag
gatcctgttgtttatatttcagagacagatgaagaggatgattttgtcaatagaagaatt
tccctgaaaccgaaggagaatgggacatcagccgttggctgtccaggaacaaatattgtc
aaaaaaggagaggtcaaaccacaagctaaaagcaagcccctgtctccagtgaaacagact
cccacctctgcacttgattactttgggacaacgagtgtccaacggtcagaaaagaaactg
gtagcaagtaaaaggaaagagccttcacaaagcagagatagcacactagatgatgaggcc
attgctaggcaactgcagcttgaagaagattcagagctggagagacagctgcatgaagat
gaagaatttgctagaactctggccatgttggatgaaacaccgcagaagaaaaaggctcgg
aaagatacagaaggagagcaaacagtactgagcatcagtagcagccctaataggacagca
ggatataagcagtcagaaagagtgaaggcaacagactcagctggtgcagccaagaattat
tctgcaaagcgtcaaaataaatctgaacagttgaaagagattgctgaaaaagaaagaggt
gctcaaaattcactatcgagagaaaaagcggctttggggaaagaagagaggacaccacca
aagaaggagaaagtctctcccaagaagactgagtctataagtcccgaggactctgaaaag
aagcgaaactaccaagcttaccgaagcttccttaatcgtgagggtccgaaagcactgggt
tccaaagagatacctcagggagctgaaaactgcttggaaggcctgacatttgtaattacg
ggtgttctggagtgcattgaaagagatgaggccaagtctctgattgaacgttacggaggc
aaagtaactggcaatgtcagcaagaagacaaattacctggtgatggggcgagactgcggc
cagtccaaacgtgagaaggcatcaactttaggtacaaaagttattgatgaggatggtctg
tttgatcttattcgaactatgccaggcaaaaagtccaaatatgagctggcagctgaaaca
gaggcagagaaagtggagtcaagacctaaaaagacacctcagaaaactgaagctggaaaa
agaaattttagcccctataaaagggaagctaataataagtacaagtctactcctgaaaaa
ggagatactgccagatctgtcaagagagaaaccactgctattcgaaagcttacggacttt
aaacatcacacagtagaggagaaagaagccccaaaacctaaggggaacttggtttctgag
gttaatgaagatggtacagagaaattgttatgggtagataaatacaagcctgtatctctt
aaggcaattattggacagcagggtgagcaaagctgtgccaataaactgctccgatggctc
agaaattggcacaagaataccttggaagatggacaagcaaaacccagtaaaactggaagc
aaagatgatgggacaagttttaaagcagctttactttctggtccacctggagttggtaaa
actactacagctgctttggtttgtaaggaactggggtatagctacgtggagctgaatgcc
agtgacactcgcagcaagaacagtctaaaggaagtagttgctgaatcacttaacaacacc
agcatcaaagacttctattctggtgcatcctcatcagttagcgggaaacatgtattgatc
atggatgaagtggatggtatggcaggcaatgaagacagaggagggattcaggagctgatt
gctttgatccgacacacgaagatacccatcatttgtatgtgcaatgatcgcaaccatcct
aaaatccgctccttggtccactactgcttggatcttcgttttcagagacctcgtctagaa
cagatcaagggtgccatgatgtctattgcatttaaagaaggtttaaaaattcccccacct
gctatgcaagagataatcctggcagcaaaccatgacatcagacaggttttacataatctt
aatatgtggtgtgcaagagataaatcattgacttatgatgaggctaaaacagatgccagc
agagccaaaaaggacatcaaattgggccctttcgatgttgtccggaaggtttttgctact
ggagaggaggctgttcgtatgtctcttatagacaaatcagatcttttcttccatgattat
tcgctagctcctctctttgtacaagagaactacgtgcatgtgaaaccggctgctgctgga
ggtaatttaaaaaagcacttggtgctcttgagtagagcagctgatagtatatgtgatggt
gatatagtggacaagcagattcgtagcaagcagaactggaatcttcttccaacacaggct
atttatgccagcgttctccccggggagctgatgagaggttacatgtcccagtttcctgtc
tttcccagctggctggggaaattttcatccacaggcaaacatgatcgtatcattcaagaa
ctggcaatgcacatgagtctcagaactcagacatgcaagaggacagtaaatatggaatat
ttgtcatatttgcgggatgcacttgtccagcccttgaaagactttggagcagatggtgta
caacaagctataacatttatggactcctactgcttgatgaaagaagatgttgaaaatatc
atggaaataagcatgtggggaggcaaacccagtcctttttcaaagctggattccaaggtc
aaagcagctttgacacgtgcctacaacaaagaggcacatctgactccatattcacttagt
tctgtcaaggcatctaaaaggcagtcgggatctgcagtgactttagatctgagcgaagac
ttgaatgtggaagagatgcagtctgatgaggatgagcaagatactgttgacagtgatgca
atgattaagcaaaaaaaggtgaagtcctccaagctgacaaaaaaagagaaaaatgaagaa
acaacaaaaaaagaagggaaaagaaaagagaaaacaagacatttagagtaa
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integrated database retrieval system
