Corvus cornix (hooded crow): 104690918 Help Entry 104690918         CDS       T03546                                  Symbol HTT Name (RefSeq) huntingtin isoform X1   KO K04533   huntingtin Organism ccw  Corvus cornix (hooded crow) Brite KEGG Orthology (KO) [BR:ccw00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ccw03019]     104690918 (HTT)    04131 Membrane trafficking [BR:ccw04131]     104690918 (HTT)    03029 Mitochondrial biogenesis [BR:ccw03029]     104690918 (HTT) Messenger RNA biogenesis [BR:ccw03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      104690918 (HTT) Membrane trafficking [BR:ccw04131]  Endocytosis   Rab GTPases and associated proteins    Rab associated proteins     104690918 (HTT) Mitochondrial biogenesis [BR:ccw03029]  Mitochondrial quality control factors   Regulator of mitochondrial biogenesis    Other regulator of mitochondrial biogenesis     104690918 (HTT) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Htt_C-HEAT Htt_N-HEAT Htt_bridge Htt_N-HEAT_1 HEAT HEAT_GCN1 HEAT_2 HEAT_EF3_N Rad26-like_helical_rpts Motif Other DBs NCBI-GeneID:  104690918 NCBI-ProteinID:  XP_039406372 LinkDB All DBs Position 4:complement(64042555..64121289) Genome browser AA seq 3096 aa AA seqDB search MATMEKLTKAFESLRSFQQQQGPATPPEEPLQRPKKELSATKKDRVNHCLTICENIVAQS LRNSPEFQKLLGIAMELFLLCSEDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNV LLGLLVPVEDDHPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKETEISPSPEQL IQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPELLHALTACGGMAQVSVSKDEAASR SRSGSIVELIAGGGSSCSPVLARKHKGKVLLGEEESLDDDSETRSDVSAASFAASVKGEI TSELASSSGVSTAGSAGSSAADATGHDIITEQPRSQHTLQSDSVDLASCDLTSTATEGED DEVLSRSSSQISAVQSDATMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGA EGQYSGMQIGQLQDEEDEAANILQDDSSESFRNSSLALQQPHLLKTMSHSRQPSDSSVDR FISKEDAADAGDHENKPSRVKGDIGHYTDRDCAPLVHCVRLLSASFLLTGDKGALVPDRD VRVSVKALAVSCVGAAVALHPESFFSKLYKTPLEAMGEEYEEQYVSDILNYIDHGDPQIR GATAILCGTIVNSILIKSRFDVEKWLINVRSSTGNLFSLIDCIPLLQKTLKDESSVTCKL ACTAVRHCIMSLCSSSYSELGLQLIVDLLTLKNSSYWLVRTELLETLAEVDFRLVSFLEG KTESLHRGIHHYTGLLKLQERVLENVVISLLGDEDPRVRHVAAASLMRLVPKLFYNCDQG QADPVVAVARDQSSVYLKLLMHETQPPSHFAVSTITRTYRGYNMLQSPTDITMENNLSRV IAAISHALTISTTRALTFGCCEALCLLSTTFPVCTWSVGWHCGVSQPSSSDEAQKGCTIG MAGLVLSLLSSAWFPLDLSAHQDALILTGNLLAASAPKCLKNPWSAEEDSNQGAAKQEEP WPALADRALVTLVEQLFSHLLKVINICAHVMDDVAPGPAVKAALPSLTNPPSLSPIRRKG KERESVEQASVPMSPKKSGEASPASRQADAAGPVPTSKSSSVGSFYHLPSYLKLYDVLKA THANYKVTLDLQNTNEKFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREP TMATVCVQQLLKTLFGTNLASQYDGLSSNPSKAQGKAQRLGSSSLRPGLYHYCFMAPYTH FTQALADASLRNMVQAEQEHDASGWFDVLQKVSTQLKTSISSAAKHRADKNAIHNHIRLF EPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG QFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI VHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKR LSRQIADIILPMLAKQQMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMAS VSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCQAINRLRCGENNVSTPE DRTEVKQVKYPPEETFSRFLLQLVGILLEDIVTKQLKVDMNEQQHTFYCQELGTLLMCLI HVFKSGMFRRITAAATRLFTGDGSDGSFYTLESLSDLVQSMIPTHPSLVLLWCQILLLVN YTNYNWWSEVHQTPKRHSLSTTKLLSPHISGDSDESDLESKRGMCNREIVRRGALILFCD YVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENL AAPTTLKKTLQCLEGIHLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATL QNSIAQLPVEELDRIQEYLQNSGLAARHQRLYSLLDRFRLMVAPDTTSPSPLVTSHPLDG EDQPALETVILDKDWYVSLVRSQCYIKSDSALLEGAELVNRIPQPDLNSFMTSKEFNLSL LAPCLSLGMNELSRDQKNSLFETARRVTLDHVSSAVQNLPASHQVFQPLLPTEPSAYWKK LSDIFGDEVMYQSMMTLCRALAQYLLLLSKLPAGLRVPPDKEDDILKFVVMSVEALSWHL VHDQIPLSVDLQAGLDCCCLTLQQPSLWNLLSSAAYVTYACSLINCIRFIIEAVAVEPGN QLLSPERKKNTSKPLSEGEIDSNAQKTKHIIAACEMIAEMVECLQTVLSLGHKRNSSIPA FLTPVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKPLGDFGTVFPEIPVEFLQEKEIF KEFIYRINTLGWISRTQFEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAI TSLVLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRD NIATHHLYQAWDPVPSLSPATTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWLGN NITPLREEEWGEDEEDENDVPALSSPPTSPINTRKHRAGVDIHSCSQFLLELYSQWILPS NPSKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILVQYLIPAT CKAAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPII SEYLLSNLRGVAHCVNIHNQQHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCGVMVSGS DESTPSIIYHCVLRGLERLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCM YTGKEKISPSRITDANPGAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDD FFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQR TPVAMAMWSLSCFFVSASTSQWISAILPHIISRMGKSEQVDVNIFCLVAIDFYRHQIDEE LDRRAFQSVFEVVASPGTPYHRLLTCLQNVHKVTAC NT seq 9291 nt NT seq  +upstreamnt  +downstreamnt atggccaccatggagaagctgacgaaggccttcgagtcgctgcgctccttccagcagcag cagggcccggctaccccccccgaggagccgctccagagaccaaagaaagaactttcagct accaagaaagatcgagtgaatcattgtctaacaatatgcgaaaacatagttgctcagtcg ctaagaaattctccagaatttcagaaactcctgggcattgctatggaactctttctcctc tgcagtgaggatgcagaatctgatgtccggatggttgcagatgaatgccttaataaagtt attaaagctttgatggattccaatcttcccaggttacagttagagctgtataaagagatt aaaaagaatggtgcttcaagaagtctacgtgctgcactctggagatttgctgagcttgcc catctagttcggcctcaaaagtgcaggccatacttggtgaaccttttgccctgtctgaca cggataagtaagagacccgaagaatcggtacaagagacgctggctgcggcaatacccaaa atcatggcagccttcggcaattttgcaaacgacaatgagattaaggttttgttgaaggct ttcatagctaatcttaaatccagttcccccactatccgtcgaacagcagcaggatcagca gtaagcatctgtcaacattcacgaagaacacagtatttttatgcctggttattgaatgta cttttaggcttgttggttcctgtagaagatgatcatcctactcttttaattctgggtgtt ttacttacactaaggtatctcatacctttattgcaacaacaagtaaaagataccagcctg aaaggcagttttggtgtaacaaggaaagaaacagagatttcaccttcaccagaacaactt atacaggtttatgaactgactctgcactacacccagcatcaggaccataatgttgtgact ggagctttagaattgctccagcagctctttagaacacctccccctgaactgctccatgcc ctgaccgcctgcgggggtatggctcaggtcagtgtatccaaagatgaagctgccagcagg agccgcagtgggagcatagtggaacttatagctggaggggggtcttcatgcagccctgtt cttgcaagaaagcataaaggtaaagtacttcttggtgaagaagagagcttggatgatgat tctgaaacccgatctgatgtcagtgctgcatcgtttgcagcttctgtgaagggtgagata accagtgaactggcttcttcatcaggtgtgtcgacagctgggtcagcggggagctcagcc gctgatgccacaggacacgacatcatcacagagcagccccgttcccagcatacgctgcag tcagactctgtagacctagccagctgtgatttgacaagtacagctactgaaggggaagat gatgaagtacttagtcgaagctccagccagatcagtgctgtccagtcagatgccactatg gatttgaatgatggcacacaggcttcctcaccaattagtgatagctctcagactactaca gaaggtccagactctgctgtaaccccttcggacagctctgaaattgttttggagggtgct gaaggacagtattctggaatgcaaattgggcagctacaggatgaggaagatgaagctgca aatattctccaagatgattcatcagagtccttcagaaattcttctcttgctcttcagcag cctcacctgctgaaaactatgagccatagtaggcagccctctgatagcagtgtggatcga tttatatcgaaagaagatgcagcagatgctggtgatcatgagaacaagccctccagggta aagggggacatagggcactatactgacagagactgtgctcctttggtgcactgcgtcagg ctgctgtcagcttccttcctgctcactggggacaaaggagctttagttcctgatagagat gtgagagtcagtgtaaaagccttggcagtaagttgtgttggagcagccgttgcacttcac cctgaatctttcttcagcaaactgtataaaacacccctggaggcaatgggagaagagtat gaggagcaatatgtatcggacattctgaactacattgaccatggagatccccagattaga ggagctacggccattctctgtggaacaattgtcaactccattctaattaaatcccgcttt gatgtggaaaaatggctaataaatgtcagaagctcaacaggaaatctcttttccttgata gactgcatacctctgttacagaaaacattgaaagatgagtcctctgttacttgcaaactg gcttgtacagctgtgaggcattgcatcatgagcttatgcagtagcagttacagtgaacta ggtttgcaattgattgttgacctcctaactctgaagaacagttcatactggcttgtaagg acagaacttctggaaacacttgcagaggtagattttcggctagtcagcttcttggaagga aaaactgagagcttgcacagaggtattcatcattatactggtctattaaaacttcaggag agagtacttgaaaatgttgtaataagtctgcttggagatgaagatccaagagtgagacac gtggctgcagcttcattaatgaggcttgttccaaagctgttttataactgtgatcaagga caggctgacccagttgtggcagtagcacgagaccaaagcagtgtctacctgaaactcctc atgcatgaaacgcagcccccatctcactttgcagtgagcactatcaccagaacatacaga ggttacaatatgctgcaaagtccaacagatatcactatggaaaacaacctttcaagggtt attgcagcaatttcccatgcattgacaatatccactacaagagcacttacgtttggctgc tgtgaagctttgtgtcttctctccacaacatttccagtctgcacctggagtgtgggatgg cactgtggtgtttcccagccaagttcttcagatgaagctcagaagggctgcaccattggt atggctggcttggtcttgtctctcctttcatcagcatggttcccactggacctctcagca catcaggatgctttgattttgactggaaacttgcttgcagcaagtgctcccaagtgctta aagaatccctggagtgctgaagaagattcaaaccaaggtgctgctaagcaggaggaaccc tggccagctctggcagatcgagcgcttgtcactttagtagaacagctcttttctcatctg ctgaaggtcattaatatttgtgcacatgtaatggatgatgttgctcctggtccagcagta aaggcagcattaccttctctcacaaacccaccttctcttagtccgattcggaggaagggg aaagagagggagtctgtggaacaggcatctgtgccaatgagccctaaaaagagtggtgaa gcaagtccagcttctaggcaagctgatgctgcagggcctgttccaacaagtaaatcatct tcagtaggaagcttttatcatcttccatcatacctcaagttgtatgatgtcttgaaagca acccatgctaattataaggttactttggatctccagaacactaatgagaagttcggatgt ttcttacggtctgccttagatgttctctctcaaatcttggaacttgctactcttcaggac attggaaagtgtgtagaagaaattttgggatatctaaaatcatgtttcaacagagaacca acaatggcaacagtgtgtgtacagcagctgttgaaaacgttgtttgggacaaatctggct tctcagtatgatggcttgtcttcaaaccccagcaaagctcaaggcaaagctcagcgcttg ggttcctccagtctgaggcctggcctctaccactattgcttcatggcaccgtacacacac ttcacacaggcccttgctgatgccagtctgaggaacatggttcaggctgagcaggagcac gatgcttcaggatggtttgatgtgctgcagaaagtttctacacagctgaaaactagtatt tccagtgcagcaaaacatcgtgctgataagaatgctattcacaatcacattcgtttattt gaaccccttgtcataaaagcattgaaacaatacacaacaacaacgtcagtacagctgcag agacaagttctagacttgcttgctcaactggttcagctgcgagttaactactgtcttctg gattcagatcaggtgtttattggatttgtgctaaagcaatttgaatacattgaagtagga cagttcagggaatctgaagcaattattcctaatatcttctttttcctggtgttgctatct tatgagcggtatcattccaaacagataattggaattccaaagatcattcagctgtgtgat ggtatcatggccagtgggaggaaagctgttacacatgcaataccggctctgcaacccatt gttcatgatctctttgtgttaagaggaacaaataaagctgatgctggaaaagaactggaa acccagaaggaggttgtagtatcaatgctgctgagacttatccagtaccatcaggtgcta gaaatgttcatcttggtattgcaacagtgtcataaagaaaatgaagacaaatggaagagg ttgtcccggcaaatagctgacatcattctcccaatgcttgcaaaacaacagatgcatata gactctcatgatgctctgggagtattgaacactttgtttgaaattttggctccttcatcc cttcgccctgtggacatgcttttaaggagtatgtttgttactcctaaaacaatggcatca gtgagcactgtccagctctggatttctggaattttagctatccttagagttctgatttca cagtcaacagaagacatcgttctatcccgtatacaggagctttccttctcaccatatttg atttcatgtcaagcaatcaacagactgagatgtggagaaaataacgtgtccacaccagag gatcgcactgaggtcaaacaggtgaaatacccacctgaggagacattttccagattctta ctacaactggttggcattctattggaagatattgttaccaagcaattaaaagtggacatg aatgagcagcaacatactttttactgccaggagctgggcacactgcttatgtgcttaata catgtcttcaaatcagggatgtttagaagaatcacagctgcagccaccagactttttaca ggagatggatctgatggtagtttctatacccttgaaagtttgagtgaccttgttcagtcc atgattcccactcatccttctttagttctcctctggtgtcaaatcctgcttcttgtcaat tataccaactacaactggtggtcagaagtgcatcaaaccccaaagcgacacagcctttcc accactaaattgcttagtcctcatatatctggagacagtgacgaatcagatttggaatct aagcgtggcatgtgcaatcgtgagatagtgagaagaggagcactcattctcttttgtgac tacgtttgtcaaaacctacatgattcagaacacctgacctggcttattgtgaatcatgtt caagacttgattaatctgtcccatgagcctccagtacaagactttatcagtgctgttcac aggaattcagcagccagtggtctcttcatccaggccattcagtcacggtgtgagaatctt gcagctcccacaactctgaagaagaccttgcagtgcttggagggaatccacctgagccag tccggggctgtgctgaccctgtacgtggacaagctgctgtgcactcccttccgagtgctg gctcgcatggttgacaccctggcctgccgccgcgtggaaatgctgctggcagcaactctg cagaacagcattgctcagttaccagttgaagaactggatagaattcaggagtaccttcaa aacagtggattagcagcaagacaccaaagactttactcgctcttggataggtttcgtctt atggtagcaccagacacaaccagtccttcacctctggttacctcacacccactagatgga gaagaccaaccagctttagagactgtaatcctagacaaagactggtatgtgtcactagtg aggtcacagtgttacatcaagtctgactctgcactgctagaaggagcagagctggtaaat aggattcctcagcctgacctgaactccttcatgaccagcaaggaattcaacctaagcttg ttagcaccttgtttaagcctcggcatgaatgagctctcaagggaccagaagaacagcctc tttgaaacagctcggagggtaactctggatcatgtgtcttctgctgtacaaaaccttcca gccagccaccaggtttttcagccactattgccaactgagccatcagcctactggaaaaaa ctaagcgatatctttggagatgaggtgatgtatcagtctatgatgacactttgtcgtgca ctggctcagtatttgttgttactctcaaaactaccagctggtctccgtgttcctcctgac aaagaggatgatatcctgaaattcgtagtgatgtcagtagaggcactatcatggcattta gtgcatgaccagattccattaagtgtagatcttcaggctggtctggattgttgctgtctg acactacagcagcctagtctttggaatttgctgtcttctgcagcttatgtgacatatgct tgctccttaattaactgcattagatttatcatagaagcagttgctgtggaacctggtaat caacttcttagtcctgaaagaaagaagaacacttcaaaacctttaagtgagggggaaatt gactcaaatgcacagaaaacaaaacacattattgcagcatgtgaaatgatagcggagatg gtggaatgcttacagactgtcttgtcattggggcacaaaaggaacagcagcatccctgcg tttctcactcctgtcctcaagaacatcattatcagtttagcaaggctgcctctagtgaac agttacaccagagtacctcccttggtctggaaattaggctggtcaccaaagcctttgggt gactttggcacagtttttcctgaaatcccagtagaatttcttcaagaaaaggaaatattt aaggagttcatctatcgcattaatacacttggatggatcagtcgtactcagtttgaagag acttgggctactttgcttggtgtgctcgtaactcagcccattgtaatggaccaagaggag aaccagcaagaggaagatacggagaggacccaaattaatgttcttgcagtgcaagccata acctccctggtgctgagtgcaatgaccatacctgttgcaggcaatccagcagttagctgt ttggaacagcagccccgcaacaaagctttaaaagctctggacacaaggtttgggaggaag ctaagtgttatcaggggaattgttgaacaggaaatccaggcaatggtgtctaagagagat aatattgctactcatcacttataccaagcttgggaccctgttccatcactttctcctgct actacaggtgctcttatcagccatgaaaaactcttactgcagatcaatactgaacgagaa ataggagatatggattacaaactgggacaggtctctatacactcgatatggttaggaaat aatatcactccactgagagaagaagagtggggtgaggatgaggaagatgagaatgacgta cctgctctttcctcaccaccaacctctcctataaacaccaggaagcaccgggctggtgta gatatccattcttgttctcagttcttgcttgaactgtacagtcagtggatattgccatcc aaccctagcaagagaacaccagtcattttgatcagtgaagtggtgcgctcacttctggca gtgtcagacttatttacagaaaggaatcagtttgagatgatgtacacaacactaacagag ttgcgaaaggtgcatccatcagaagatgagattcttgtccagtatttgataccagctact tgtaaagctgctgctgttcttggaatggataaagctgtggctgaaccagtaagtcgactg ctggaatcaaccctaagaagcacccatatgccaagtcggattggagctctgcatggaatt ctttatatccttgagtgtgacttgctcgacgagacagcaaagcaactcattccaattatc agcgagtatctgctctccaatttgagaggagtagcacattgtgtgaatatccataaccaa cagcacatcttggtaatgtgtgcagctgctttctatttgatcgagaattacccacttgat gtagggcctgaattctctgcaggaattatacagatgtgtggagtcatggtgtctggaagt gatgaatcaacaccatccattatttatcactgtgtcctgagaggattggaacgactcctc ctttcagagcagctttctaggctggacagtgagtcgctggttaaactgagtgttgacagg gtgaatgtgcagagcccccacagagcaatggcagcccttggattaatgctgacttgcatg tacacaggaaaggaaaaaatcagtcccagccgtataacagatgcaaatcctggtgctcct gacagtgaatctgtgattgtagctatggaacgagtatctgtcctttttgataggatcagg aagggatttccttttgaagctcgagtagtggctcggattcttccacagttccttgatgat ttcttccccccacaagatgtaatgaacaaagtcattggggaatttctgtccaatcagcag ccatacccacaattcatggcaacagtagtttataaggtattccagacactgcatagcact ggacagtcctcaatggtccgtgactgggtgatgctctctctctccaatttcacacaaaga acacctgtggcaatggcaatgtggagtctttcctgtttttttgtcagtgcttccaccagt cagtggatttcagcaattcttccacatattatcagtagaatgggaaaatcagagcaagtg gatgttaacatcttctgtttggtggccatagacttctaccgacaccagattgatgaagaa ttggatcggagggccttccagtcggtgtttgaggtggtagcatctccaggaaccccatac catcgcctactgacttgtttgcaaaatgtccacaaggtcacagcatgttga

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