Corvus cornix (hooded crow): 104691013
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Entry
104691013 CDS
T03546
Name
(RefSeq) pinopsin isoform X2
KO
K04251
long/medium wavelength-sensitive opsin
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
ccw04030
]
104691013
G protein-coupled receptors [BR:
ccw04030
]
Rhodopsin family
Vision
Opsin
104691013
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srv
7TM_GPCR_Srw
7tm_4
7TM_GPCR_Srsx
7TM_GPCR_Srx
TB
CitMHS
7TM_GPCR_Sru
Motif
Other DBs
NCBI-GeneID:
104691013
NCBI-ProteinID:
XP_010400658
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Position
19:8204748..8208833
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AA seq
379 aa
AA seq
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MPSCSGARQTLLLYKEAPLLGRVTCSRCCCSMDSSWEPPNNGTPGPFDGPQWPHQAPRAM
YLAVAVLMGLVVASASVLNGLVIVVSIRHKKLRSPLNYILVNLAMANLLVTLCGSSVSLS
NNISGFFVFGKRLCELEGFMVSLTGIVGLWSLAILALERYLVICRPLGDFRFQHQHAASG
CAFTWGWSLLWTTPPLLGWSSYVPEGLRTSCGPNWYTGGSNNSSYILALFVTCFVMPLSL
ILFSYTNLLLTLRAAAAQQQESDTTQRAEKEVTRMVVAMVVAFLTCWLPYATFALVVATS
KDIVIQPALASLPSYFSKTATVYNPIIYVFMNKQFQSCLLGMLCCGYHPWGLGKTSPAAP
SPQVAAEGLRNKVTPLHPV
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgcccagctgctctggggcacgtcagaccctcctgctctataaagaggctccgcttttg
gggagggtcacctgctccaggtgctgctgctccatggacagctcctgggagcccccaaac
aacggcaccccggggcctttcgatggcccccagtggccccaccaggccccccgggccatg
tacctggcggtggccgtgctcatgggcctcgtggtggcctcggcctcggtgctcaacggc
ctggtcatcgtggtgtccatcaggcacaagaagctccgctcgcccctgaactacatcctg
gtgaacctggccatggccaacctgctggtgacgctctgtggcagctccgtcagcctctcc
aacaacatcagcggcttcttcgtgttcgggaaacggctctgcgagctggagggcttcatg
gtgtccctgacaggcatcgtggggctgtggtccctggccatccttgctttggagaggtac
ctggtgatctgcagacccctgggagactttcggttccagcaccagcacgctgccagtggc
tgtgccttcacctggggctggtccctgctctggacaaccccaccactcctgggctggagc
agctacgtgcctgaaggcctgagaacctcctgcgggcccaactggtacacgggtggcagc
aacaacagcagctacatcctggccttgtttgtcacctgctttgtgatgcccctcagcctg
atcctcttctcctacaccaacctgctgctgaccctgcgggcggccgcggcgcagcagcag
gagtcggacacgacgcagcgggcggagaaggaggtgacacgcatggtggtggccatggtg
gtggccttcctcacctgctggctgccctacgccacctttgcactggtggtggccaccagc
aaggacattgtcatccagccagccctggcatccctgccctcctacttctccaagacagcc
acggtttacaaccccatcatctacgtcttcatgaacaaacagttccagagctgcctgctg
ggaatgctgtgctgtggttaccacccctgggggctggggaaaacctctccagctgccccc
agtccccaggtcgctgcagaggggctgagaaacaaggtgacaccattgcatcctgtgtga
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