Corvus cornix (hooded crow): 104691016
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Entry
104691016 CDS
T03546
Symbol
VPS53
Name
(RefSeq) vacuolar protein sorting-associated protein 53 homolog isoform X3
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccw04131
]
104691016 (VPS53)
Membrane trafficking [BR:
ccw04131
]
Protein recycling
Others
EARP complex
104691016 (VPS53)
Endosome - Golgi transport
Tethering complex
GARP complex
104691016 (VPS53)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
COG4_N
O_Spanin_T7
Vps54_N
GrpE
Sec8_N
Syndetin_C
hAT-like_RNase-H
COG3_N
BLOC1_2
TelA
Snf7
XhlA
Med11
Motif
Other DBs
NCBI-GeneID:
104691016
NCBI-ProteinID:
XP_019143178
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All DBs
Position
19:8050518..8111976
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AA seq
754 aa
AA seq
DB search
MFGITLLPTEMMEQGFEALEEAQKAIQQLFGKIKDIKDKAEKSEQMVKEITRDIKQLDHA
KRHLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANLLQGVVNVLEHFNKYMGIPQIR
QLSERVKAAQSELGQQILADFEEAFPSQGTKRTGGPSNVLRDACLVANVLDPRIKQEIIK
KFIKQHLSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEKYGRMFPAEWCMTERIAV
EFCHVTRAELSKIMRTRAKEIEVKLLLFAIQRTTNFEGLLAKRFSGCTLADGTVKKPEVP
PPSTNPFLEDETGAETDEIVIEKSDTDKPKKPKVPDNPFHGIVSKCFEPHLYVYIESQDK
NLGELIDRFVADFKAQGPPKPNVDEGGAVLPSCADLFVYYKKCMVQCSQLSTGEPMIALT
TIFQKYLREYAWKILSGNLPKTTSSSGGLTITSLLKEKEGSEVAKFTLEELCLICSILST
AEYCLATTQQLEEKLKEKVDASLMERINLTGEMDTFSIVISNSIQLLVQDLDAACDPALT
AMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKFANSFIPKF
INHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTKIVVKGMTRAEM
ILKVVMAPHEPPVVFVDNYIKLLADCSTDTFQKILDMKGLKRSEQSSMLDLFRLRLPAPP
PGGDSTSSLSLSAPTPEQESSRIRKLEKLIKKRL
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgtttgggattacactcctgcctactgagatgatggagcagggctttgaggccctggaa
gaagcccagaaagccattcaacagctcttcggtaaaattaaggatattaaagacaaggct
gaaaaatctgaacaaatggtgaaggaaatcacccgggatatcaagcagctggatcatgcc
aagcgtcacctgaccacctccatcaccaccctcaaccacctccacatgctggcagggggg
gtggattctctggaggctatgaccaggaggagacagtatggggaagttgccaaccttctc
caaggtgtcgtgaatgtgttggagcacttcaacaaatacatggggatccctcagattcga
cagctctctgagagggtgaaggcagcacagagcgagttggggcagcagatcctggctgat
tttgaggaagcctttccttctcaaggtacaaagaggactggtgggcccagcaatgtccta
cgtgatgcctgcctggtagccaacgtcctggatcccaggatcaaacaggaaatcatcaag
aaatttattaaacaacatctctcggagtatctggtccttttccaggaaaatcaagatgtg
gcctggctggataagatcgaccggcgctacgcctggatcaagaggcagctggtggattac
gaggagaagtacgggcgcatgttcccggcggagtggtgcatgacggagcgcatcgccgtg
gagttctgccacgtcaccagggcagagctctctaagatcatgcgcacgagggcgaaggag
attgaggtgaaattgcttttgtttgcaattcagagaacaaccaacttcgaagggctcctg
gccaagcgcttctcaggctgcactcttgctgatggcacagtgaagaagccagaagtgcca
cctccctccaccaacccctttctggaggatgaaactggggcagagacagatgagattgtg
atcgagaaaagtgatacggacaaaccaaagaagccaaaggtccctgacaatcctttccat
ggcattgtttccaagtgctttgagcctcacctttatgtgtatattgagtcccaggacaaa
aacctgggcgagctgattgacaggtttgtggctgacttcaaggctcagggaccccccaag
cccaacgtggatgaaggaggagccgtcctgcccagctgtgctgacctctttgtgtactac
aagaagtgcatggtgcagtgctcccagctcagcactggtgagcccatgatagccctgacc
accatcttccagaagtacctgcgggaatatgcctggaaaattctctctggaaacctgccc
aagacaaccagcagcagtggtgggctcaccatcacaagtttgctgaaagaaaaggaaggc
tctgaagtggcaaagtttactttagaagagctctgcctcatttgcagcatcctaagtact
gcagagtactgcctggccaccacccagcagttggaagagaaactcaaagaaaaagtggat
gcgagcctaatggagagaatcaacctgacaggagagatggacactttcagcattgtgatc
tccaacagcatccagctgttagtgcaggacctggatgcagcctgtgaccctgccctgact
gctatgagcaagatgcagtggcagaacgtggaacacgtcggtgaccagagtccttatgtc
acctcagtgatcctccacattaaacagaatgtgcccatcatccgtgacaacctggcctcc
acgaggaagtatttcactcagttctgcataaaatttgcaaactccttcattcccaagttc
attaaccatctcttcaagtgcaaacctatcagcatggtgggtgctgagcagctgctgctg
gacactcattctctgaagatggttctcctggatctgccctccattgggtcccaagtggtg
aggaaggctcctgccagctacacaaagatagtggtgaaaggcatgactcgggctgaaatg
atcctgaaggtggtgatggctccacatgagcccccagttgtgtttgtggacaattacatc
aagctcctcgctgactgcagcactgacacgttccagaagatcctcgacatgaagggcctg
aagaggagtgagcagagcagcatgttggatctcttccgcctgcgcctccccgctcctccc
cccggcggggacagcaccagctccctctcactgagcgctcccacgcccgagcaggaatcc
tctcggatacggaaactggagaaactcatcaaaaagagactctga
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