Corvus cornix (hooded crow): 104691066
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Entry
104691066 CDS
T03546
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03030
DNA replication
ccw03420
Nucleotide excision repair
ccw03430
Mismatch repair
ccw03440
Homologous recombination
ccw03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104691066 (RPA1)
03420 Nucleotide excision repair
104691066 (RPA1)
03430 Mismatch repair
104691066 (RPA1)
03440 Homologous recombination
104691066 (RPA1)
03460 Fanconi anemia pathway
104691066 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccw03000
]
104691066 (RPA1)
03032 DNA replication proteins [BR:
ccw03032
]
104691066 (RPA1)
03400 DNA repair and recombination proteins [BR:
ccw03400
]
104691066 (RPA1)
Transcription factors [BR:
ccw03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104691066 (RPA1)
DNA replication proteins [BR:
ccw03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104691066 (RPA1)
DNA repair and recombination proteins [BR:
ccw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104691066 (RPA1)
MMR (mismatch excision repair)
104691066 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
104691066 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
OB_MEIOB_N
DUF4939
IBR
Motif
Other DBs
NCBI-GeneID:
104691066
NCBI-ProteinID:
XP_039418954
LinkDB
All DBs
Position
19:6340541..6363493
Genome browser
AA seq
614 aa
AA seq
DB search
MSVRLSEGAIAAIMQGEDVSKPVLQVINTRAIATGTGPPRYRVLMSDGVNTLSSFMLATQ
LNSLVEQERLSARCICQVNRFIVNSLKDGRRVVILMDVNVMQTADQVGGTIGNPQPYNEG
QGQQRSAAPAGNPAASKPQQQNGNLSGAGPAAPKYHAPSNQFGKASAPSALKTPGGSQAK
VVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQAD
KFFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFTNETSVVPCDDAQHLPSVQFDFV
SISDLENTPKDSIVDVIGICKSYEDVTKITVKANNREVSKRNVHLMDTSGKLVTVTLWGN
EAEQFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVINPDSPEAFKLRGWFDSEGQLLE
CASISDVRGGPAAGANTNWKTLFEAKSENLGQGDKADYFSCVGTIVHLRKENCMYQACPS
QDCNKKVIDQQNGLYRCEKCDREFPNFKYRLLLLVTIADCLEYQWVTCFQDSAEFILGQN
AAFLGELKEKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAMDVKPVNYREYS
KRLIANIRRNAQLG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgcggctgagcgagggggccatcgcggccatcatgcagggggaggacgtctcc
aagcccgtgctgcaagtgatcaatacacgggctattgctacaggaactgggcccccacgt
taccgagtgctgatgagcgatggggtgaacaccctttcctctttcatgttggcaacacag
ctgaactccctggtggaacaggaacgcttgtcagcccggtgtatttgccaggttaacaga
ttcattgtcaacagcctgaaagatggaaggagagtggttatcctgatggatgtaaatgtc
atgcaaactgctgatcaggttggtgggactattggcaatccccagccatacaatgaaggg
caagggcagcaacgttctgcagctccagcaggaaacccagcagccagcaaaccacagcaa
caaaatggcaatttgtctggagcaggtcctgctgctcccaagtaccacgctccctccaac
cagtttggaaaagcgagtgctcccagtgccctgaagacacctggggggtctcaggccaaa
gtggtgccaattgccagcttgaatccataccagtccaagtggaccatttgtgctcgggtc
acccaaaaaggccagatccgcacgtggagcaactcccgtggtgaaggaaagctcttttcc
atagagctggttgatgaaagtggtgagattagagctactgcattcaatgatcaagcagac
aagttctttccactcattgaattgaacaaggtatattattttaccaaaggcaatttgaag
actgctaacaagcaatatacagctgttaagaatgactatgagattacgttcactaatgag
acttcagttgtgccctgtgatgatgcccagcatcttccatctgttcagtttgattttgta
tccatctctgacttggagaacacgcccaaagactcgattgttgatgtaattggaatttgt
aagagctacgaagatgtcactaaaattacagtgaaggctaacaatagggaggtttcaaag
aggaacgtgcatctgatggatacatcagggaagctggtgacagtcacgctgtggggaaac
gaggctgaacagtttgatggttccagacaacctgtgattgccatcaaaggagcccgtgtc
tctgactttggtggcagaagcctgtctgtcctgtcctccagcacagttgtcatcaaccct
gatagcccagaggcttttaaactccgaggatggtttgactccgaggggcagcttctggaa
tgtgcctccatctctgatgtgaggggtgggccagcagctggagcaaataccaattggaaa
actttgtttgaagccaaatctgagaacttgggacaaggagataaggcagattattttagc
tgtgtgggcacaattgtacatctgcgcaaagagaactgcatgtaccaggcatgtccctct
caggattgcaacaagaaagtgatagaccagcaaaatggactttaccgctgtgagaagtgt
gaccgcgaattccccaacttcaagtaccgcctgctgctcctggtgaccattgcagactgt
ctggaatatcagtgggtgacttgttttcaagattcagcagaattcattcttgggcaaaat
gcagctttcctgggagaactgaaggaaaagaacgagcaggcttttgaagaagtgttccaa
aacgcaaacttcaacacgtacgagttcaggatccgagtgaaactggagacttacaatgac
gaatcccgtattaaggccacagcaatggacgtcaaacccgtgaactacagagaatacagc
aagaggttgattgccaacatcaggagaaatgctcagctggggtga
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