Corvus cornix (hooded crow): 104691093
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Entry
104691093 CDS
T03546
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
104691093 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccw03400
]
104691093 (LIG3)
Enzymes [BR:
ccw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104691093 (LIG3)
DNA repair and recombination proteins [BR:
ccw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
104691093 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
aRib
mRNA_cap_enzyme
DUF3802
Motif
Other DBs
NCBI-GeneID:
104691093
NCBI-ProteinID:
XP_039418657
LinkDB
All DBs
Position
19:complement(5391476..5405060)
Genome browser
AA seq
983 aa
AA seq
DB search
MPTGGRALSHAARALGRGTALFCPRPQLSLPRPFSCCVRVKPGHWCQLLFQPVSLPATDQ
RGAAGAFRLSLLLGARPRSARTAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGK
IVPNPFTESGGDMKEWYHVKCMFEKLDKARATTKKIEDITDLEGWEELQDEEKETINKYI
SEANSKTGGTPKKKVIVQAKLTATGQLTTKDPPKKFSGFTAKPKNSEDAPANSAHKSSLS
ASKCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLRKGSAGDGFHGDVYLTIKLL
LPGVIKIVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETIRIFFEQSKTCPPAAKS
LLTIQEVDEFLIQLSKLTKEDDQQTVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVL
DALDPNAYEAFKASRNLQDVVERVLHNQQEAEKAPGLKRTLSVQASLMTPVQPMLAEACK
SIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFP
GGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPL
CERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDVKGSYEPGK
RHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCS
GGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFS
KAEAHTADGISIRFPRCTRIRDDKDWQTATNLQQLKELYQLSKEKADFSVVAGEEDESTA
GSSGENDENSRSSTPHSSIKSPPSKSPAKAQKAEESRGVIGSPQKAEEKRGEKRKASEME
DNGKKQPLLDIFTGVKLYLAPSVKDFARIRRYFIAYDGDLVPEFDTASATHVLGDIDANP
GAQRVTARWIWECIRKRRLLAPC
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgggcggcagggcactgtcacacgctgcccgcgctctcggcaggggcacagcg
ctgttctgccctcgcccacagctctccttgcccagacccttctcttgctgtgtcagagtc
aagcccggccactggtgccagctgctgttccagcctgtctccctgccagccacagaccag
cgcggcgctgccggagcgtttcgtctctccctgcttttgggcgcacggccgcgctcagcc
cgcacagctgcggaggacatggcagagcagaggtactgtgtggactatgccaagcgaggc
accgcgggctgcaagaagtgcaaggagaagatcgtgaaggggatggtgcgcattgggaaa
attgtccccaatcctttcacggagtccgggggggacatgaaggagtggtaccatgtcaag
tgcatgtttgagaagctggacaaggcccgggccaccaccaagaaaatcgaagacatcaca
gacttggaggggtgggaagagctgcaggatgaggagaaagaaacaatcaacaagtacata
tcagaagccaattccaagactggaggtaccccgaagaaaaaggtgatagtgcaggcaaag
ctcactgccacaggacagctgaccacaaaagatccaccaaagaaattctctggattcact
gccaagccaaagaattcagaagatgcccctgcaaactctgcccacaagtccagcctgtct
gcatccaagtgtgatcccaagcacaaggactgcctgctgcgggaattccggaagctctgt
gccatggtggccgaaaagccaagctacaatgtgaaaacacagatcatccaggacttcctc
aggaagggatctgcaggagatggttttcatggtgatgtatacctgaccattaagctgctg
ttaccaggtgtcattaaaatagtttacaacttgaatgataagcagattgtaaagctgttc
agtaggatttttaactgcaaccaggaagaaatggtccgggacctggagcagggagatgtt
tccgagaccatacggatcttcttcgagcagagcaagacttgtcctccagcagccaagagc
ctcctgaccatccaggaggtcgatgaattcctaatccagctgtccaagctcaccaaggag
gatgaccagcagactgtcctgcagcagatcagtcgcaggtgtacgggcaacgacctgaaa
tgcatcatcaggctaattaagcatgacttgaaaatgaatgctggagcaaagcacgtgttg
gatgctctggatcccaacgcctacgaggcgttcaaggcctcgcggaacctgcaggacgtg
gtggagcgggtgctgcacaaccagcaggaggccgagaaggcgccggggctgaagaggacc
ctgagcgtgcaggcctcgctcatgaccccggtgcagcccatgctggctgaggcctgcaag
tccatcgagtacgccatgaagaagtgtcccaacgggatgtacgccgagatcaagtacgac
ggcgagcgcgtgcaggtgcacaagaacggagatcacttcagctacttcagcaggagcctc
aaacctgtgctcccccacaaagtagcccattttaaggacttcatcccccaggctttccct
ggtgggcaaagtatgatcctggattcagaagttctcctaattgacaataaaactggcaag
ccacttccttttgggactcttggtgtgcacaagaaagctgctttccaagatgccaacgtt
tgcctgtttgtgtttgactgcatctacttcaatgacgtcagcctgatggacaggcccctg
tgtgaacggcgcaagttcctccacgacaacatggtggaaatccccaaccggatcctgttc
tcggagatgaaacacgtcacaaaagcttcagacctggcagacatgatcacccgagtcatc
cgggaggggctggaagggctggtgctgaaagatgtcaagggtagttatgaaccagggaaa
cgccactggctgaaggtgaagaaggattatctcaatgagggggcaatggctgacacagct
gacctggtggtgctgggggctttctatggacaaggcagtaaaggtgggatgatgtccatc
ttcctcatgggctgctacgaccccaagagcgagaagtggtgcactgtgaccaagtgctcc
ggtggccacgatgacgccaccctggcacgtctgcagacagagctggacatggtgaagatc
agcaaggatcctagtaaaattccaaggtggctaaaaattaacaaaatctactacccagac
ttcattgtcccagatccaaagaaagcccccgtgtgggagatcaccggggccgagttctcc
aaggccgaggctcacactgcggacgggatctccatccgcttcccgcgctgcacccgcatc
cgcgacgacaaggactggcagacagccaccaacctgcagcagctcaaggagctgtaccag
ctctccaaggagaaggctgatttcagtgtggtggctggagaggaagatgagtccacagct
ggcagcagtggagagaatgatgagaattccaggtcttccacacctcacagcagtattaag
agtcccccaagcaagtcccctgcaaaagcccagaaggcagaagagagcagaggagtcatt
ggatcccctcagaaagccgaggagaaacgaggggagaagagaaaagcatcggagatggag
gacaacggaaaaaagcagccgctgctggacattttcacgggggtgaagctgtacctggcc
ccctccgtgaaggacttcgccagaatccgccgctacttcatcgcctacgacggggacctg
gtgccggagttcgacacggcctcagccacccacgtgcttggggacattgatgccaatccc
ggcgcccagcgggtgactgccaggtggatctgggaatgcatccgcaagcgcaggctgctg
gccccgtgctag
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