Corvus cornix (hooded crow): 104691162
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Entry
104691162 CDS
T03546
Symbol
MED13
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 13
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccw03021
]
104691162 (MED13)
Transcription machinery [BR:
ccw03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
104691162 (MED13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
104691162
NCBI-ProteinID:
XP_039419063
LinkDB
All DBs
Position
19:8604619..8658954
Genome browser
AA seq
2179 aa
AA seq
DB search
MSSCFVPNGASLEDCHSNLFCLADLTGIKWKRYVWQGPTSAPILFPVTEEDPILSSFSRC
LKADVLSVWRRDQRPGRRELWIFWWGDDPNFADLIHHDLSEEEDGVWENGLSYECRTLLF
KAVHNLLERCLMNRNFVRIGKWFVKPYEKDEKPINKSEHLSCSFTFFLHGDSNVCTSVEI
SQHQPVYLLSEEHLTLAQQSNSPFQVILSPFGLNGTLTGQSFKLSDSSTKKLIGEWKQFY
PVTSNLKEGSEEKQEEMDWEDDSLAAVEVLVAGVRMVYPACFVLVPQTDIPAPSSVGAPH
CSTACLGVHQVPASTRDPAMSSVTLTPPTSPEEVQTVDAQSAQKWVKFSSVSDGFISDST
SHHGGKIPRKLANQVVDRVWQECNMNRAQNKRKYSATSNGLCEEETADKVASWDFVEATQ
RTNCNCSRHKNLKPRNSGQQGQAPPVGPQQPAAPKHKTNEKQDKGDKPQKRPLTPFHHRV
SISDDVAMEADSASQRLVMTAPDSQVRFANIRTNDVAKXPQLHGAELANSPQPPPLSPHP
CDGADEGVPKAPSTPQSQHFYQMPTPDPLVPTKAMEDRLDGLSQPFPAAFPEVIEPTMYV
GTAVNLEEDEADTTWKYYKVPKKKDVEFLPPQLPNDKLRDDPVIPAGQENVTSVTELMVQ
CRKPLKVSDELVQQYQSKNQYLTAVATEADQEPEIDPYAFVDGDVEFLFPDSKKDRQNIE
REVGKKHKAEDGTSSVTVLSHEGEDAMSLFSPSVKQDAQRLAAHARTASTSLFHETDLVV
SYTDLDNLFNSDEDELTPGSKRTVNGTDDKSNCKEAKTGNLDPLSCISTADLHKMYPTPP
SLEQHIMGFSPMNMNNKEYGSMDTTLGGTVLEGNSSTVGAQFRIEVDEGFCSPKPAEIKD
YSYVYKPENCQALVGCSMFAPLKTLPSQCLPPIKLPEECIYRQSWTVGKLDLLPPGPAMP
FIKDGDGSTLDQEYGPAYTPQTHTPFGMPPSSAPPSNSGAGILPSPSTPRFPTPRTPRTP
RTPRGAGGPASAQGSVKYENSDLYSPASTPSTCRPLNSVEPATVPSIPEAHSLYVNLILS
ESVMNLFKDCNFDSCCICVCNMNIKGADVGVYIPDPTQEAQYRCTCGFSAVMNRKFGNSS
GLFLEDELDILGRNTECGKEAEKRFEALRATSIEHGSGGLKEPEKLPDDLILLLQDQCTN
LFSPFGAADQDSIPKVGAVSNLVRVEERDCCNDCYLALEHGRQFMDNMSGGKVDEALVKT
TCLHHWSKRNVVDVSMQCSQDILRMLLSLQPVLQDAIQKKRTVRSWGVQGPLTWQQFHKM
AGRGSYGTDESPEPLPIPTFLLGYDYDFLVLSPFALPYWERLMLEPYGSQRDVAYVVVCP
ENEALLNGAKSFFRDLTAIYESCRLGQHRPICKLLPDGIMRVGPTASKKLSEKLVTEWFS
QTANANNEAFSKLKLYAQVCRYELGPYLASQPLDNSLLSQTNLVPPSSQAASALPPVTAP
AANPNTPSSAPAAPTSSTITVTSTSAMSSAATTANSTLTTTAPSSSSASLGSGIPTSKPS
SFPPFSNMNNTTPASLPAQTAPVPNGQTGGQQQQPTLQTAGMSGDTAAAPAQPHPEISES
TMDRDKVGVPTDGDSHAITYPPAIVVYIIDPFTYEKKDENSSSSSLWTLGLLRCFLEMVQ
VLPPNIKNIISVQIVPCQYLLQPVKHEDRQIYTQHLKSLAFSAFTQCRRPLPTSTNVKTL
TGFGPGLAMETALRSPDRPECIRLYTPPFILAPVKDKQTELGETFGEAGQKYNVLFVGYC
LSHDQRWLLASCTDLYGEQLETCIINIDVPNRARRKKGSARRLGLQKLWEWCLGLVQMSS
LPWRVVIGRLGRIGHGELKDWSCLLSRRNLQSLSKRLKDMCRMCGISAADSPSILSACLV
AMEPQGSFIIMPDSVSTGSVFGRSTTLNMQTSQLNTPQDTSCTHILVFPTSASVQVASST
YTTENLDLAFNTNNDGADGMGIFDLLDTGDDLDPDIINILPASPGGSPVHSPGSHYPHGG
DMGKGQGTDRLLSTESHDEVTNILQQPLALGYFVSTAKAGPLPDWFWSACPQAQNQCPLF
LKASLHLHVPSVQSDELLHSKHSHPLDSNQTSDVLRFVLEQYNALSWLTCDPATQDRRSC
LPIHFVVLNQLYNFIMNML
NT seq
6540 nt
NT seq
+upstream
nt +downstream
nt
atgagttcctgcttcgtgccgaacggggccagcctggaggattgccattccaacctcttc
tgcctggctgatctaactgggattaaatggaagcgctacgtgtggcagggcccaacatct
gcccccattctcttccctgtcacggaggaggatcccatcctgagcagcttcagccgctgt
ctcaaggccgacgtgctcagtgtctggcgccgggaccagaggcctgggcgcagggagctc
tggatattctggtggggggatgaccccaactttgctgacctgatccatcatgatctctca
gaagaggaggatggggtttgggagaacgggctctcctacgagtgccgcactctgctgttc
aaagccgtgcacaacctgctggagaggtgtctgatgaacaggaacttcgtccgcatcggc
aaatggtttgtgaagccttatgagaaagatgagaaacccataaacaaaagtgagcacttg
tcctgctcgttcaccttcttcctgcacggggacagcaatgtgtgcaccagcgtggagatc
agccagcaccagcccgtgtacctgctcagcgaggagcacctcaccctggcccagcagtcc
aacagccccttccaagttatcctgagcccctttgggttgaatggcacactcacagggcag
tccttcaagctttctgattcatccacaaaaaagctgattggggagtggaagcaattctac
cccgtcacatccaacttgaaggagggatctgaggaaaaacaagaagaaatggattgggag
gatgattctttagctgctgttgaagttcttgttgctggtgtgaggatggtgtaccctgcg
tgctttgtgctggtccctcagacagacatccctgctcccagctccgtgggggctccccac
tgctccaccgcttgcctgggggtccaccaagtgcctgcttccaccagagaccctgccatg
tcctcggtcacactgactccacccacgtccccggaggaagttcaaacagttgatgctcaa
tctgcccagaaatgggtgaagttttcctcggtttcagacggatttatctcggacagtacc
agccatcacggtggcaaaatccccagaaaattggccaaccaagtggtggacagagtctgg
caagagtgcaacatgaacagagcacagaacaagaggaagtattctgctacatcaaatggc
ttgtgtgaggaggagacagctgacaaggtggcatcctgggattttgttgaagccacgcag
aggacaaattgcaattgttcaaggcacaaaaatctcaaaccaagaaattcaggtcaacag
gggcaggccccacctgtgggcccccagcagccggcggctccgaagcacaagacaaatgag
aagcaagacaaaggggataagccacagaaacgccctttgactccttttcatcatcgtgta
tctatcagtgatgatgttgccatggaggcagattcagcgagtcagaggcttgtgatgact
gcaccagacagccaagtgaggtttgccaatatccgaactaacgatgtagcaaagnccccc
cagctgcacggggccgagctggcaaactcgccacagccgccgccgctcagcccccacccc
tgcgacggcgccgacgagggggtgcccaaagctccctccacgccccagagtcaacacttc
taccagatgccaacgccagaccccttggttcccacaaaagcaatggaagacaggctcgat
ggcttgtcccagccttttccagctgcgttccccgaagttatagagcccaccatgtatgtc
ggcactgccgtgaatttggaggaggacgaagctgacacgacttggaagtattataaagtt
ccaaagaaaaaggatgtggagttcttaccaccccagcttccaaatgataagttgagagat
gatccagtaatacctgctggacaggaaaatgtaacatcagttacagaattaatggtgcaa
tgtaggaaacctttgaaggtttcagatgaactggtgcaacagtatcagagtaaaaaccaa
tatttaacagctgtagcaacggaagctgaccaggaacctgaaattgatccttatgccttt
gtggatggagatgtggaattcctatttcctgacagcaaaaaagacaggcagaacattgag
agggaagtggggaagaaacacaaggctgaggatgggacatccagtgttacagttctgtcc
catgaaggagaggatgcaatgtctctgtttagtccttctgtcaagcaagatgcccaacgt
ttggctgcccacgcccgcactgcctcgaccagcctgttccacgagacagacctggtggtg
tcctacactgacctggacaatctcttcaattctgatgaagatgaactcacacctggatct
aaacgaacagtgaacggcaccgatgacaaatccaactgcaaagaggcaaaaacaggaaat
ctagacccactgtcatgcataagcactgcagatctccataaaatgtatccaactccccct
tcactggaacaacatattatggggttttctccaatgaacatgaacaataaggagtacggc
agcatggacactacacttggaggaacagtgctggaagggaatagctctactgtgggagct
cagttcagaattgaagtagatgagggcttctgcagtcccaaacctgctgaaatcaaggat
tattcttatgtttataaacctgagaactgtcaagctttagtgggatgttccatgtttgca
ccactgaagactcttcccagccagtgtcttcctcccatcaaactgcccgaggaatgcatt
taccgccagagctggactgtgggaaagctggatttgcttcctccaggccctgccatgcct
ttcatcaaagacggtgatgggagcaccttggatcaggagtacggccctgcctacacccca
cagacccatactccgtttgggatgcccccgagcagtgcccctcccagcaacagcggggct
ggaattctcccttctccttccacccctcgcttcccaactcccagaacaccaaggactccc
cgaacaccccgtggagctggcgggcctgcgagtgcccagggctcagtgaaatacgagaac
tcggatttgtactccccagcttccacgccctccacgtgtcggccgctgaattccgtggaa
cctgcaacggtgccttccatccccgaggcacacagcctgtatgtgaatctcatcctctct
gagtccgtcatgaatctcttcaaagactgcaactttgacagctgctgcatttgtgtttgc
aatatgaacatcaaaggtgctgatgttggagtttacattcctgatccaacacaagaggcc
cagtataggtgtacctgtggtttcagtgctgttatgaatagaaaatttggcaacagttct
gggctgtttcttgaagatgagctggatattctggggcgaaacacggagtgtggcaaagaa
gcagaaaaacgctttgaagctctcagagctacttccattgaacacggcagtggagggctg
aaagaacccgagaaactgcccgatgacttgatactgttgctgcaggatcaatgcaccaac
ctgttctcaccttttggagcagcagaccaagactccatccccaaagttggtgctgttagc
aacctggtacgtgtagaagaaagggattgttgcaatgactgctacttagccttggaacat
ggacggcagttcatggacaatatgtcaggagggaaagttgatgaagcacttgtgaaaact
acttgcttgcaccactggtcaaaaagaaacgtggtggatgtgagcatgcagtgttcccag
gacatcctccgcatgctgctctcgctccagcccgtgctgcaggacgccatccagaagaag
cgaacggtccggtcctggggggtgcagggacccctcacgtggcagcagttccacaaaatg
gctgggagaggctcctacggaaccgatgagtccccggaaccactgccaatcccaacattt
ttgctgggatatgattacgatttcctggtgctgtctccatttgcattgccctactgggag
aggttgatgctggaaccttacggatctcagcgagacgttgcttatgttgtggtgtgcccg
gagaacgaggctctgctcaatggagccaaaagcttctttagggatctgactgcaatatac
gagtcctgcaggcttggtcagcacagacctatctgtaagttactgcctgatgggatcatg
agggttggacctacagcctccaagaagctctcagagaagttggtcacggagtggttctca
cagacagccaatgccaacaacgaggcattctccaaactcaaactctacgctcaagtttgc
agatatgagctgggtccttatcttgcttctcagcctttggacaattctttactttcccaa
acaaacctggtccctccctctagccaggcagcctctgctctgcccccagtgacagcccct
gctgcaaatcccaacactccgtcgtcggctcctgcagctcccaccagcagcaccatcaca
gtgacctccaccagtgccatgtcctctgcagccactacagccaactccaccctgaccacc
actgccccatcctcctcctctgccagtctgggcagtggcattccaacgagcaagccttcc
tcattcccacctttcagcaatatgaacaataccactcctgcctccctgcccgcccagact
gcaccagtcccaaatgggcaaactggggggcagcagcaacagccaacactgcaaacagca
gggatgtctggagacacggctgcagcacctgcacagccccatccagagatttctgaaagc
actatggatcgtgataaagtcggagtccccacagatggagattcacatgctatcacctat
ccacctgcaattgtagtttacataattgatcctttcacatatgaaaaaaaggatgagaac
agtagctcatctagtttgtggacacttggacttctgcgctgctttctagagatggttcag
gttcttcctcccaacatcaagaacatcatttctgtgcagattgtcccatgtcagtacctg
ctccagcctgtgaaacacgaggaccggcagatttacactcagcatttaaaatctttggca
ttttcagctttcactcagtgtcggagacctctcccaacttccaccaacgtgaaaacctta
actggctttggcccaggtttagccatggaaactgctcttaggagccctgatagacctgag
tgtattcgactctacacccctccttttatactggctccagtaaaggacaagcaaacagag
ctgggagaaacctttggagaagctggccagaagtataatgtgctttttgtgggctactgt
ttgtctcatgatcagaggtggctgcttgcatcctgtacagacctctatggagagcagtta
gaaacttgcataattaatattgatgtaccaaacagagctcgcaggaaaaagggttctgcc
cgcagacttggtctccagaaactctgggaatggtgcttgggacttgtgcagatgagctct
ttgccatggagagttgtaattggccgcttaggaagaataggacatggggaattaaaagac
tggagctgtttgctgagccgccggaacctgcagtccctcagcaagaggctgaaggacatg
tgcaggatgtgtgggatctctgccgcagactcccccagcattctcagtgcttgcttggtg
gccatggaaccccagggatccttcattattatgccagattctgtgtccaccggctctgtg
tttgggcgcagcaccaccctgaacatgcaaacgtctcagctgaacacaccccaggacacg
tcctgcactcacatcctggtgttccccacgtctgcatctgtgcaagtggcatcatccact
tacactactgagaacctggatctggcctttaacacaaacaatgatggagcagatggaatg
ggaatctttgacttgttagacactggagatgatcttgatcctgatattataaatattctt
cctgcatctcctggtggatcccctgtgcattctccagggtcccactacccccatggaggt
gatatgggcaagggtcaaggcacagatcgattgctttccacagaatctcatgatgaagta
acaaatatactgcagcagccactggccctcggttattttgtgtcaactgccaaagcaggt
ccattgcctgactggttttggtcagcgtgtcctcaagcacaaaatcagtgtcccttgttt
cttaaggcctctttgcacctccacgtgccttcagtgcaatcagacgagctactccacagt
aaacactcccatccacttgattctaatcaaacttctgatgtgctcaggtttgttctggaa
cagtacaatgcactctcctggctaacctgtgatcctgcaacccaggacagacggtcatgt
ctcccaattcattttgtggtgctgaatcagttgtataactttatcatgaatatgctgtga
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