Corvus cornix (hooded crow): 104691211
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Entry
104691211 CDS
T03546
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104691211 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccw03041
]
104691211 (PRPF8)
Spliceosome [BR:
ccw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104691211 (PRPF8)
Complex C
U5 SnRNP specific factors
104691211 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
104691211
NCBI-ProteinID:
XP_039418706
LinkDB
All DBs
Position
19:complement(6257983..6276168)
Genome browser
AA seq
2335 aa
AA seq
DB search
MAAVFPYRGGCAPVPNPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtgttcccgtaccgcggcggctgcgccccggtgcccaacccgctggcgccg
ctgcccgattacatgtccgaggagaagctgcaggagaaagcccgcaagtggcagcagctg
caggccaagcgctatgcggagaagaggaaattcgggttcgtggacgcgcagaaggaggac
atgccccctgagcatgtccgcaaaatcatccgcgaccacggcgacatgaccaataggaag
ttccggcacgacaagcgcgtctacctgggtgctctgaagtacatgcctcatgctgtgctg
aagctcctggagaacatgcccatgccctgggagcaaatccgagacgttcctgtcctgtac
cacatcaccggcgccatctcctttgtcaacgagatcccctgggtcatcgagcctgtctac
attgcccagtgggggtccatgtggattatgatgaggcgggagaagagggacaggcgtcac
ttcaagaggatgagattccccccatttgatgatgaagagccccctctggattatgctgat
aacatcctggatgtggagcccctggaagccattcagctggagctggatccagaggaggat
gcccctgtgctggactggttctatgaccaccagcctctgaaggacaataggaagtatgtc
aatggctccacgtaccagcgctggcagttcaccctccccatgatgtccaccctgtaccgc
ctggccaaccagctgctcactgacctggtggatgacaactacttctacctgttcgacctc
aaagccttcttcacttccaaggcactgaacatggccattcctggaggtcccaagtttgag
ccccttgtcagagacatcaatcttcaggatgaagactggaatgaatttaatgacatcaac
aaaattatcatcaggcagcccatcaggacagagtacaaaattgctttcccgtacctgtac
aacaacctgccacaccatgtccacctcacctggtaccatactccaaatgttgttttcatt
aaaacagaagatcctgatctcccagctttttacttcgatcctctgatcaaccccatttca
cacagacattctgtcaagagccaggaaccactgcctgatgacgatgaagagtttgagttg
ccagagtttgtggaacctttcctgaaggatacccctctctacactgataacacagccaat
ggcattgccttgctgtgggccccacgacccttcaatttgaggtctggcaggacccggaga
gctcttgacatcccactggtgaagaactggtaccgcgagcactgcccggcaggacagcca
gtcaaggtgagagtctcctaccagaagctcttgaaatactatgtcctgaatgccctcaaa
cacagacctcccaaggcccagaagaagaggtacctgttccgctccttcaaggctaccaag
tttttccagtcaaccaagctggactgggtggaagttggcctgcaggtgtgtcgccagggc
tacaacatgctgaacttgctgatccacagaaagaacctgaattaccttcacttggattac
aacttcaacctgaagcccgtgaagaccctcaccactaaggaaagaaaaaaatcccgtttt
gggaacgctttccatctgtgccgagaggtcctgcggctgactaagctggtggtggacagc
cacgtccagtacagactgggaaatgtggatgcatttcagctggcagatggcctgcagtac
atctttgcccacgtgggtcagctcacggggatgtaccggtacaaatacaaactgatgagg
cagattcgaatgtgcaaggacctgaaacatctcatctactacaggtttaacacagggcct
gtgggcaaaggtcctggctgtggtttctgggctccaggctggagagtgtggctgttcttc
atgaggggcatcaccccgctgctggaacgctggctggggaatctgctggccaggcagttt
gaaggccgtcactcgaagggtgtcgcaaagactgtcacgaagcagcgcgtggagtctcac
ttcgacctggagctcagggcagctgtgatgcatgacatcctggacatgatgccagaaggg
atcaaacagaacaaagccagaaccatcctgcagcacctgagcgaggcttggcggtgctgg
aaggccaatattccctggaaggtgccagggctgccaactcctattgagaacatgatcctg
aggtacgtgaaggccaaagctgactggtggacaaacacagctcactacaaccgggagcgg
atccgccggggagccactgtcgacaaaaccgtctgtaagaagaacctgggcaggctgacc
agactctacctgaaagctgagcaggaacggcagcataactacctaaaggatgggccttac
atcacagcagaagaggccgttgctgtgtacacaaccacagtgcactggctggagagcagg
aggttctcccccattcccttccccccactgtcctacaagcacgacaccaagttgctgatc
ttagccctggagaggctgaaggaagcttacagtgtgaagtcacgcctgaatcagtcacag
agagaggagctgggcttgattgagcaggcttatgataatccccacgaagctctgtccaga
atcaaacgacatctgttgactcagagagccttcaaggaggtgggaatcgagttcatggat
ctctacagccacttggtccctgtttatgacgttgagcccctggagaagatcacagatgct
tatctggatcagtacttgtggtatgaggctgataagcgaagactcttccctccttggatc
aaacctgctgacactgaaccacccccactgctggtgtacaagtggtgccaaggcattaat
aacctgcaggatgtttgggaaacgagtgaaggggagtgcaacgtgatgctggaatctcgg
tttgagaagatgtatgagaagattgacctgaccttactcaacaggctgctgcgtctcatc
gttgatcacaacattgctgactacatgacagccaagaacaacgtggtgatcaactacaag
gacatgaatcacacaaactcctatgggattattcgtgggctgcagtttgcttccttcatt
gtccagtactatgggcttgtgatggacctgctggtgctgggcctgcaccgggccagtgaa
atggctgggcctccccagatgccaaatgacttcctcagcttccaggacattgccacggag
gtggcccatcccattcgcctcttctgcagatacattgacaggattcacatcttcttcagg
tttacagctgacgaggcaagagacctgattcagcggtacctgacagagcacccagacccc
aacaacgagaacattgtgggctacaacaacaagaagtgctggccccgggatgctcggatg
cgcctcatgaagcacgacgtgaaccttggccgtgctgtgttctgggatatcaagaaccgt
ttgccccgctcagtgaccacggtgcagtgggagaacagctttgtgtccgtgtacagcaag
gacaaccccaacctgctgttcaacatgtgcggcttcgagtgccgcatcctgcccaagtgc
cgcaccagctacgaggagttcacccacaaggacggggtctggaacctgcagaacgaggtc
accaaggagcgcacggctcagtgcttcctgcgggtggatgacgagtctatgcagaggttt
cacaacagagtgaggcagatcctcatggcctctggctccacaaccttcactaagattgtc
aataaatggaatacagctctgattggcttgatgacttattttcgggaagctgttgtaaat
actcaggagctgcttgatttgctggtgaagtgtgagaataaaatccagactcggatcaag
attggcctgaattccaaaatgcccagccgttttcctcctgtggtgttctacacccctaag
gagcttggggggctgggcatgctctccatgggccacgttctcatccctcagtctgacctg
aggtggtccaagcagacagatgttggcatcactcacttccgctcgggaatgagtcatgag
gaggaccagctcatcccaaatctgtatcgttacatccagccatgggagagtgaattcatt
gactctcagagggtgtgggcagagtatgccctgaagcgacaagaggctatagcccagaac
aggcgtctgacgctggaggatctggaggactcgtgggacagggggattcctcgtattaac
acccttttccagaaggaccggcatactctggcttatgataaaggatggagagtcaggact
gacttcaaacagtatcaggtgctgaagcagaacccgttctggtggacgcaccagcgccac
gatggcaaactctggaacctgaacaattaccgcacagacatgatccaggctctgggcggg
gtggaagggatcttggagcacactctcttcaagggcacctacttccccacgtgggagggt
ctcttctgggagaaggccagtggctttgaggaatccatgaagtggaagaagctgacaaat
gcccagagatcgggtttgaaccaaattccaaacagaagattcactctctggtggtctcct
accattaacagagccaatgtgtatgttgggttccaggtgcagctggatttgacagggatc
ttcatgcacggcaaaatccccacgctgaagatttccctcattcagattttccgagctcac
ttgtggcagaagatccacgagagcattgtcatggatttgtgtcaggtatttgatcaagag
ctggatgctctggagattgagacagtgcagaaagagacaatccatcccaggaagtcctac
aagatgaattcctcgtgtgcagatatccttctctttgcttcctacaagtggaatgtgtca
cgtccatcattgctggcagattccaaggatgtgatggacagcaccaccacccagaagtat
tggatagacatccagctgcgctggggcgactacgattcccacgacatcgagcgctacgcc
agggccaagttcctggactacaccacagacaacatgagcatctacccctctcccactggg
gtgctcatcgccattgatctggcctacaacctgcacagtgcttatgggaactggttccct
gggagcaaacctctgatccagcaggccatggccaaaatcatgaaagcaaaccctgccctg
tatgtgttgagggaacgaatccgcaaagggctgcagctctactcctcggagcccacagag
ccctacctgtcctcccagaactatggggagctcttctccaaccagatcatctggtttgtg
gatgacaccaacgtgtacagagtcaccatccacaagacttttgaagggaatttgaccaca
aaacccatcaacggagccattttcatcttcaatcccagaactggacagctcttcctgaag
atcatccacacatctgtgtgggcaggacagaagcgtctgggacagctggccaagtggaag
actgctgaagaagtggctgccttgatccgatcccttcccgtggaggagcagccaaagcag
atcatagtgacacggaagggcatgctggacccacttgaggtgcacttgctggatttcccc
aatattgtgatcaaaggctcggagttgcagctgcccttccaggcctgtctgaaagtggag
aagtttggtgatctcatcctgaaggccactgaaccccagatggttctcttcaatctctat
gatgactggctgaaaacaatctcttcttacacagcattctcccgtctgatcctgattctc
cgggcgctgcacgtgaataatgatcgagccaaagttatcctgaagccagacaagacaacc
atcactgagcctcaccacatctggccaaccctgacagatgaggagtggatcaaggtggag
gtgcagctgaaggatctcatccttgctgactatggcaagaagaacaacgtgaatgttgca
tccctgacccagtcagagatccgagacatcatcctgggcatggagatctctgccccatct
cagcagaggcagcagattgcagaaatcgagaagcaaaccaaggagcagtcacagctgaca
gccacacagacccgcacggtgaacaaacacggggatgaaatcatcacctccaccaccagc
aactacgaaacccagactttctcctccaagactgagtggagggtcagagcaatttctgct
gccaatctccacctgcggacaaaccacatctatgtctcatcagatgacataaaggagaca
ggttacacctacattcttcccaaaaatgtgttgaagaagttcatctgcatctcagatctg
cgggcccagattgcaggttacctgtatggagtgagccctccagacaacccccaggtgaag
gagatccggtgcattgtgatggtgccccagtgggggacacaccagaccgtgcacctccca
gggcagctgccacagcacgagtatctcaaggaaatggaacctctgggatggattcacacc
caaccaaacgagtcccctcagctctcaccacaggatgtcaccacccatgccaaggtcatg
gctgacaacccctcctgggatggggagaagaccatcatcatcacctgcagtttcacccct
ggctcctgcacgttgacagcctacaaactgaccccgagcgggtacgagtggggccggcag
aacacggacaaaggaaacaatcccaagggttacctcccctcccactacgagagggtgcag
atgctcctgtccgaccgcttcctcggcttcttcatggtccccgcacagggctcctggaac
tacaacttcatgggtgtccgccacgaccccaacatgaagtacgagctgcagctcgccaac
cccaaggagttttaccacgaggtccaccgcccctctcacttcctcaacttcgctctgctg
caggagggggaggtttactccgccgaccgcgaggatctctacgcctaa
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integrated database retrieval system
