Corvus cornix (hooded crow): 104691311
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Entry
104691311 CDS
T03546
Symbol
PCDH11X
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
104691311 (PCDH11X)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccw01009
]
104691311 (PCDH11X)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ccw04515
]
104691311 (PCDH11X)
Protein phosphatases and associated proteins [BR:
ccw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104691311 (PCDH11X)
Cell adhesion molecules [BR:
ccw04515
]
Cadherins
Protocadherins
104691311 (PCDH11X)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
K319L-like_PKD
Fibulin_C
Cadherin_4
TMEM154
Motif
Other DBs
NCBI-GeneID:
104691311
NCBI-ProteinID:
XP_010401055
LinkDB
All DBs
Position
4A:complement(5723204..6162092)
Genome browser
AA seq
1245 aa
AA seq
DB search
MDLLSGTYLLAVLLACIVFQSGAQEKNYTVREELPENVLIGNLLKDLNLTLDPDVPLSSP
LQFKLVYKTGDVPLVRVEENTGEIFTAANRIDREKLCAGIFSENRCFYEVEVAVLPDEVF
RLVKIRFLIEDINDNAPLFPSTVINISIPENTAINSRYSVPSAIDPDIGVNGIQHYELLK
PKTAPKRTFGSITNDQGQNVFGLDITETPEGDKWPQLIVQQILDREQKDTYVMKIKVEDG
GSPPRSSTAILQVTVTDVNDNRPVFKENDIEVSVPENAPVGTSVSQLHATDADLGSNAQI
HFYFSNQISSLAKRLFAIDNTTGLITIREPLDREESPVHKLTVLASDGSSTPSRATVTVN
VTDINDNVPSIDTRYIINPVNGTVLLSEKAPLNTKIALITVMDKDADQNGKVTCFTDHDV
PFRLKPVFDNQFLLETATFLDYEATREYAIKIVASDSGKPPLNQSAMLLIKIKDENDNAP
VFTQPIIGLSIPENNAPGTQLTKISATDADSGRNAEISYILGSDAPPIFNLDRRTGILTA
VRKLDREKQDRYSFTVLAKDNGMPPLQTNATVTVSVLDQNDNSPAFTHNEYNFYVPENLP
MYGTVGLITVTDADAGDNAAVTLSILNGRDNFIIDPLTGVIRPNITFDREQQGSYTFQVK
AVDGGRLQRSSTAKVTINVVDVNDNRPVFVIPSSNYSYELVPTSASPGSVVTKVFAVDND
TGMNAELRYSIIGGNSRGLFTIDQLTGNITLKEKVITSDHGLHRLVIKVNDLGQPESLYT
IALVHLFVNETVTNSSYVQELVRRNMETPVGQNIGDGEITPQTNDYVKIIIAIIAGTMTV
ILVIFVTALVRCRQTPRHKVVQKNKQSGEWVSPNQENRQIKKKKKKKKRSPKSLLLNFVT
IEESKPDDPGHEHINGTLDIPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPT
FQIKPETPVPPKKHHVIQELPLDNTFVVGCDSLSKCSSSSSDPYSVSECSCQGGFKTPGP
IHTRQHTKEVGRPQTPLKETSLEPWTQPQPQRRVTFHLPDGSQESCSDSGLGDHEPTSGA
STSHPLPLGFPQDEFYEQASPNSRTEGDGNSDPESTIEVNLQKALAEASENCTQECLILG
HSDNCWMPPALTQFQQPNTSLPSFGFQQGWGRGARPEGRHTLGRPLPKDDSDKGQGGPRP
QFYNTCERHCASEDPVKVIPLASFAASHQAPGPGSNTTFIHEHQL
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggacttgctgtctggaacctacctcttggcagtcttgttggcctgcattgtattccaa
tctggcgcacaggagaagaattacaccgtgcgggaagaactgcctgaaaatgtcctcatt
ggcaatctgctcaaggatctcaacctaacgctggacccagacgtgcccctgtcctccccg
ctgcagttcaagctcgtctacaagactggggatgtgcccctggtgagggtggaggagaac
actggggagatcttcacggctgccaaccgcatcgaccgcgagaagctgtgcgccggcatc
ttcagcgagaaccgctgcttctacgaggtggaggtagctgttctgcccgacgaggttttc
agactggtcaagatcaggttcctaattgaggatataaatgacaacgccccccttttcccc
tcaacagttattaacatctctatccctgagaacacagccattaattcccgctactcggtc
ccttctgccatcgacccagacatcggggtgaatggtatccagcattatgagctcctcaag
cccaaaacagctccgaaaaggacatttggatccattacaaatgaccagggtcaaaatgta
tttggtcttgacataactgagacacctgagggagataagtggcctcaactgattgtccag
cagatcctggatagggagcagaaggacacctatgtgatgaaaatcaaagttgaggatggt
gggagccccccgaggtccagcactgccatcctgcaggtcacagtgaccgatgtcaacgac
aaccgcccggtgttcaaagagaacgacatcgaggtcagcgtgccagaaaatgccccagtg
ggcacctctgtctcccagctccacgccaccgacgcagacctgggctcaaatgcacagatc
cacttctatttcagcaatcagatctccagcctggccaaaaggctctttgccatcgataac
accactggcctcatcaccatcagggaaccactggacagggaggaatctcctgtgcacaaa
ttaactgttttggcaagcgatggcagctcaacgccatcaagagcaacagtgactgttaat
gtcacagatattaatgacaatgtcccatctatagacacgaggtacatcatcaatccggtg
aatgggacggtgcttttgtctgagaaggctccccttaatacaaaaattgcgttgataaca
gtgatggacaaggacgctgatcagaatgggaaagttacctgttttacagaccacgatgtc
cctttcaggctaaaaccagtgtttgataatcagtttctcctggagacagccacatttcta
gactatgaagcgacacgggaatatgccatcaaaattgtggcttcggattcggggaagcct
cccttaaaccagtctgcaatgctcctgatcaaaattaaagatgaaaatgacaatgcccca
gttttcacacagcctatcataggtctttccatccctgaaaacaacgctcctggtactcag
ctaaccaagatcagtgctacggatgccgacagcgggcggaatgctgagatcagctacatc
ctgggttccgatgcgcccccaatattcaacctggaccgccgtacaggcatcctgacagca
gtgagaaagctggacagagaaaagcaagacaggtactctttcactgtgctggcaaaggat
aatgggatgccacctttgcagaccaatgctaccgtgacggtgtcggtgctggaccagaat
gataacagccctgctttcacacataatgaatataatttctatgtgccagaaaacctgccc
atgtatggcacagtggggcttatcacagttacggatgctgatgcgggagacaacgctgcg
gtcactctctctatcttaaatggtagagataatttcattatagatccacttactggtgta
ataagacctaatataacctttgatagggagcagcaggggtcatacactttccaggtgaaa
gcagtggatggaggaagactgcagcgttcctcaactgccaaagtgaccatcaatgttgtt
gatgtaaatgataacaggcctgtttttgttattccctcatctaattattcctatgagttg
gtcccaacgtcagccagcccaggttctgtagttactaaagtctttgcagttgataatgac
acgggaatgaacgcagagctccgctatagcatcataggtgggaactccaggggcttgttt
accattgaccaattaacaggcaatattactttgaaagagaaggtgattacatcagatcat
ggcttgcacagactggtgatcaaagtgaatgacctgggacagccagagtctctttacacg
atagctcttgtgcacttgtttgtgaacgagacggtcaccaacagctcctatgtgcaagag
ttggtgcgtagaaatatggaaactccagttggccagaacattggggatggtgagataacc
ccacagaccaatgattatgtcaagatcatcattgccattattgcaggcaccatgacagtt
attctggtaatttttgttaccgctttagtccggtgccgccagacgcccaggcacaaggtt
gtccaaaaaaataagcagagtggtgaatgggtttcccccaaccaagagaataggcagatc
aagaaaaagaagaagaagaagaagcgctctccaaaaagtctcctcctcaactttgtgact
attgaagaatctaagcctgatgaccctggccacgagcacataaatggcactttagacatt
cccgtagagctagaagaacagactatgggaaagtataactgggccaccacaccaaccaca
tttaaacctgatagcccagacttagcaaagcactacaagtctgcttctccgcagcctacc
tttcaaattaaacctgagactcctgtaccccccaagaagcaccatgtcattcaggaattg
cctctagataacacctttgtggtgggctgtgactcactttccaagtgttcatccagcagc
tcggacccttacagtgtttctgaatgcagctgtcaaggaggcttcaagaccccaggcccc
atacacaccagacagcacacaaaggaagtgggaaggccacaaactcctttgaaagaaaca
tccttggagccctggactcagccacagccccagcgccgtgtcacgttccacctgccagat
ggctcccaggaaagctgcagtgacagtgggctcggagaccacgagcccacgagcggggcc
agcacgtcccacccgctgcccctgggcttcccccaggacgagttctacgagcaggcgtcc
cccaacagccgcacggagggcgacggcaactcggaccccgagtccactatcgaagtgaat
ctgcagaaagctctggccgaagcctctgaaaactgcacgcaggagtgtctgatcctcggc
cactccgacaactgctggatgccgccggctctgacgcagttccagcagcccaacacctct
ttgccatcgtttggcttccagcaaggctggggccgaggagccagacctgagggacggcac
actcttgggaggcccctgccaaaggatgacagtgacaaaggccagggggggcccaggccc
cagttctacaacacctgcgaaagacattgcgccagcgaggatcccgtcaaggtcattcct
ctggcaagcttcgccgcgtcccaccaggcaccggggcctgggagcaacaccacgtttata
cacgagcaccagctgtag
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