Corvus cornix (hooded crow): 104691490
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Entry
104691490 CDS
T03546
Symbol
SPTBN1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04517
IgSF CAM signaling
ccw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
104691490 (SPTBN1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104691490 (SPTBN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ccw04812
]
104691490 (SPTBN1)
Cytoskeleton proteins [BR:
ccw04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
104691490 (SPTBN1)
Intermediate filaments
Intermediate filament-binding proteins
104691490 (SPTBN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CENP-K
CAMSAP_CH
SLATT_6
SOS1_NGEF_PH
PH_11
Motif
Other DBs
NCBI-GeneID:
104691490
NCBI-ProteinID:
XP_010401277
LinkDB
All DBs
Position
3:1704594..1821520
Genome browser
AA seq
2359 aa
AA seq
DB search
MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKALADEREAVQKKTF
TKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKAL
QFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKKSAKDALL
LWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNL
AEQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKMKALAVEGKRIGKVLDNAIET
EKMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKG
NLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRNELIRQEKL
EQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLPAVEAATKKHEAIETDIAAYEERVQA
VVAVAKELETENYHDIKRITARKDNVIRLWEYLLELLRARRQRLEMNLGLQKIFQEMLYI
MDWMDEMKVLLLSQDYGKHLLGVEDLLQKHALVEADIAIQAERVRGVNASAQKFATDGEG
YKPCDPQVIRDRVAHMEFCYQELCQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQI
LSSDDYGKDLTSVVRLLSKHKAFEDEMSGRSGHFQQAIKEGEDMIAEEHFGSEKIRERIK
DIREQWANLEQLSAIRKKRLEEASLLHQFQADADDIDAWMLDILKIVSSNDVGHDEYSTQ
SLVKKHKDVAEEIASYRPTIDSLHEQAKALPQEHAGSPDVQGRLSGIEERYKEVAELTRL
RKQALQDTLALYKMFSEADACELWIDEKEKWLNNMQIPEKLEDLEVIQHRFESLEPEMNN
QASRVAVVNQIARQLMHSGHPGEKIKAQQDKLNTRWSQFRELVDRKKDALLSALSIQNYH
LECNETKSWIREKTKVIESTQDLGNDLAGVMALQRKLTGMERDLVAIEAKLSDLQKEAEK
LESEHPDQAQAILSRLAEINDVWEEMKTTLKNREESLGEASKLQQFLRDLDDFQSWLSRT
QTAIASEDMPNTLTEAEKLLTQHENIKNEINNYEEDYQKMRDMGEMVTQGQTDAQYMFLR
QRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEMPTTL
EGAEAAIKKQEDFMTTMDANEEKINAVVETGRRLVSDGNINSDKIQEKVDSIDDRHRKNR
EAASELLMRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEARNLHSKWLKHQAFMA
ELASNKEWLEKIEKEGMQLIAEKPETEAVVKEKLTGLHQMWDELESTTQTKAQRLFDANK
AELFTQSCADLDKWLNGLESQIQSDDYGKDLTSVNILLKKQQMLENQMDVRKKEIEELQS
QARALSQEGKSTDEVDGKRLTVEKKFLELLEPLNERKANLLASKEIHQFNRDVEDEILWV
GERMPIATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQPRIDDIFERSQNIITESSPNAEV
IQQRLADLKQLWNLLIEETEKRHKRLEESHRAQQYYFDAAEAEAWMSEQELYMMSEEKAK
DEQSAVSMLKKHQILEQAVEDYAETVHQLSKTSRTLVADNHPESERISMRQSKVDKLYAG
LKDLAEERRGKLDERHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFRE
FARDTGNIGQERVDTVNHMADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILA
ASYELHKFYHDAKEVLGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQ
LQEDAARLQAAYAGDKADDIQKRENEVLEAWKALLDACEGRRVRLVDTGDKFRFFSMVRD
LMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKH
YASEEIKEKLLQLTEKRKEMIDKWEDRWEWLRLILEVHQFSRDASVAEAWLLGQEPYLSS
REIGQSVDEVEKLIKRHEAFEKSAATWDERFAALERLTTLELLEVRRQQEEEERKRQPPT
PETKAEEDGDSQQQWDGTKGEQVSQNGLPSDQESPRVAETAETNEMVNGAAEQRTSSKES
SPVPSPTSDRKAKSGVQAQTAATLPAKTQEIPSAQMEGFLHRKHEWETHSKKASSRSWHN
VYCVINNQEMGFYKDSKAAASGIPYHNEIPVSLKDAVCEVAVDYKKKKHVFKLRLTDGNE
YLFQAKDDEEMNTWIQAITSAISSDKIEVSPTTQSTPASSRAQTLPASVTITSESSPGKR
EKDKEKDKEKRFSLFGKKK
NT seq
7080 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaacggtagcgacagattacgacaacatcgaaatccaacagcagtacagcgac
gtcaacaaccgctgggatgtcgacgactgggacaatgagaacagttctgctcggctcttt
gagcgctcccgcatcaaggctttggctgatgaacgtgaggcagttcagaagaagaccttc
acaaagtgggtgaattcccacttggctcgtgtgtcctgccgaattacagacctgtacact
gaccttcgagatgggaggatgctcatcaaactcctggaagtgctttcaggagagagactt
cctaaaccaaccaaaggaaggatgcgcatccattgcctggagaacgtggataaagccctc
cagttcctgaaagagcaacgagtgcacctagaaaacatgggatctcatgatattgtggat
gggaatcacaggctgacacttggccttatttggactattatcctgagattccagatccaa
gatatcagcgttgaaactgaggacaataaagagaagaaatctgctaaagatgctttgctt
ttgtggtgccagatgaaaacagctgggtaccccaacgtcaatatccacaactttacaaca
agctggagggatgggatggcgttcaatgcactgatccataagcacaggcctgatctgatt
gattttgacaagctgaagaaatcaaatgcacactacaatctgcagaatgcttttaacctt
gcagagcagcaccttggtcttaccaagctcctggaccctgaggatatcagtgttgatcac
cctgatgaaaagtcaatcatcacctatgtggtgacgtattaccactacttctccaagatg
aaagctttggctgttgaaggaaaacgtattggaaaggtgcttgacaatgccattgaaaca
gagaaaatgatagaaaaatacgagtccctggcttctgacctgctggagtggattgagcaa
accattatcatcctcaacaatcgcaaatttgccaactccctggttggggtgcagcagcag
ctgcaggcgttcaacacttaccgcacagtggagaaaccacccaaatttacagaaaaaggg
aacctggaagtgctgctttttaccatccaaagcaaaatgagagccaacaatcagaaagtg
tacatgccgagggagggcaaactcatctctgacattaataaggcctgggaaagactggaa
aaagctgaacatgaaagagaactggcactgcgaaatgagctcatcagacaagagaaactg
gaacaacttgcacggagattcgatcgcaaggcagctatgagagaaacttggctgagtgaa
aatcaacgtctcgtttctcaggacaattttggctttgacctcccagcagtggaggctgcc
acgaagaagcacgaggccatcgagacggacattgcggcgtacgaggagcgggtccaggcc
gtggtggcggtggccaaggagctcgagactgaaaactaccacgacatcaaacgcatcact
gcgaggaaggacaatgttatccgcctgtgggagtatctcctggagctgctccgggcacgg
agacagcggctcgagatgaaccttgggctgcagaagattttccaggaaatgctgtacatt
atggactggatggatgaaatgaaggtgcttctgctgtcccaagactacggcaaacatttg
ttgggagttgaagacctgctgcagaaacatgctctggtggaagctgacattgctattcag
gctgagagagtgagaggagtcaatgcctctgctcagaagtttgccaccgatggagaaggt
tacaagccctgcgacccgcaggtgatcagggaccgcgtggctcacatggagttctgctac
caggagctctgccagctcgcagccgagcgccgcgcacgcctcgaggagtcccggcgcctc
tggaaattcttctgggaaatggctgaagaggagggctggatcagggagaaggaacagatc
ctgtcatctgatgactatgggaaggacctaaccagtgtcgtccgactcttgagtaaacac
aaggcgtttgaggacgagatgagtggccgcagcggccactttcagcaggcgataaaagaa
ggtgaagacatgattgcggaagagcattttgggtctgagaagatcagagaaagaattaag
gatatccgggagcagtgggctaacctggagcagttatctgccattaggaagaagcggctg
gaggaagcctctctccttcaccagttccaggccgatgctgatgatattgatgcgtggatg
ttggacatcctcaagattgtctccagcaatgatgttggccacgatgaatattccactcag
tccttggtcaagaaacacaaagatgtggctgaggagattgcgagctaccggccgaccatc
gactctcttcacgagcaggccaaggccctgccacaggagcacgcggggtccccagatgtg
caaggcaggttgtccggaatcgaggagagatacaaagaggttgctgagctgacccggctg
cgtaaacaggccctgcaggataccctcgctctctataagatgttcagtgaggcagatgct
tgcgagctttggatcgacgaaaaggagaagtggctgaataatatgcagattccagagaag
ctggaggacctggaagtgatccagcacaggtttgaaagcttggagccagaaatgaacaac
caggcgtcccgcgtggccgtggtgaaccagattgccaggcagctgatgcacagtggccac
cccggtgagaagatcaaagcacagcaagataaactcaacacaaggtggagccagttcaga
gaactggtagataggaagaaggatgctctgctctctgctctgagtatccagaactaccat
cttgaatgtaatgaaaccaaatcctggatcagggaaaagaccaaagtgatcgaatccaca
caagacctgggtaacgacctggctggagtgatggccctgcagaggaagctgacgggcatg
gaacgggacctggtggccattgaagccaagctcagtgacctgcaaaaggaggcggagaag
ctggaatcagagcatcctgaccaggcacaagccatcctttcacggcttgcagagatcaat
gatgtgtgggaagaaatgaagaccaccctaaagaaccgggaagagtccctgggagaggcc
agcaagctgcagcagttcctgagagatctggatgacttccagtcctggctctccagaaca
cagactgcaatcgcctccgaagatatgcccaacaccctgacagaggctgagaagctgctc
actcagcatgagaatatcaagaatgaaatcaacaactatgaggaagattatcaaaagatg
agggacatgggtgagatggtgacgcaagggcaaactgatgctcagtacatgttcctacgc
cagcgcctccaagctttggacacgggatggaatgagctgcacaaaatgtgggagaacagg
caaaatctcctttcccagtctcatgcctaccagctgtttctcagagataccaagcaagca
gaagctttccttaataaccaggagtatgttctggcgcacacggagatgccaactaccttg
gaaggagcagaagctgctattaaaaagcaggaggacttcatgaccaccatggatgccaat
gaggaaaagatcaatgcagttgtggagacaggcaggaggctcgttagtgatgggaacatt
aactctgataaaatccaggagaaagtggactctattgatgacagacataggaagaaccgt
gaagcagccagtgaacttctgatgagactgaaagataacagggatctccaaaagtttctt
caggattgccaggagctctccctctggatcaatgagaagatgctcacagcccaggatatg
tcctatgatgaggcaaggaacctgcacagcaagtggctgaagcatcaggcattcatggca
gagcttgcatccaacaaagagtggctggagaagattgaaaaggagggaatgcagctcatt
gcagagaaaccagagaccgaggccgtggtgaaggagaagctgacgggtctccaccaaatg
tgggacgagcttgaatccaccacccagaccaaggctcagcgtctctttgatgcaaacaag
gcagagctttttacccagagctgtgcagacctggataagtggctgaatggtttggagagc
caaatccagtcagatgactacggaaaagatctcaccagtgtcaacatcctgttgaagaag
cagcagatgctggagaatcaaatggatgtccgtaagaaggagatagaggagctgcaaagc
caggcaagggctttgagccaagagggcaagagcacagatgaagtcgatggcaaacgcctt
actgtagaaaagaaattcttggagctgctagagcctttgaatgagagaaaggccaacctg
ctggcctccaaagagatccaccagttcaaccgggatgtggaagatgaaattttgtgggtt
ggagagaggatgcccatagctacatctactgatcatggacacaacctccagactgtgcag
ctactaataaagaaaaatcagacccttcagaaagaaatccagggccaccagcctcgtatc
gatgacatcttcgagaggagtcagaacattatcacagagagcagccccaatgctgaagtc
attcagcagagacttgcagacttgaagcagctgtggaacctcctcatcgaggagacggag
aagcgccacaagcgcctggaggagtctcacagggctcagcagtattacttcgatgcagcc
gaggctgaggcctggatgagtgagcaggagctctacatgatgtcagaagagaaagccaag
gatgaacagagtgcagtgtccatgctgaagaaacaccagattttggaacaagctgtagaa
gattatgctgaaactgtgcaccagctttcaaagaccagcagaactttggtggcagataat
cacccagaaagcgagcgcatcagcatgcgccagtccaaggtggacaagctctatgcaggc
ctgaaggacctcgctgaggagaggaggggcaagctggacgagaggcaccggctgttccag
ctcaaccgcgaggtggacgacctggagcagtggatcgccgagagggaggtggtggcaggg
tcccacgagctgggccaggactacgaacacgtcacaatgctgcaggagcggttccgggaa
ttcgcccgggacaccgggaacatcgggcaggagcgggtggatactgtcaaccacatggcg
gatgaactcatcaactccggccattcggacgctgccacgatcgccgagtggaaggacgga
ctcaatgaggcctgggcagatctcctggagctcattgacacgagaacacagatccttgca
gcctcttatgaactgcacaaattttaccacgatgccaaggaggtcttaggacgtatccaa
gacaaacataagaaactgcccgaggagcttggtagagaccaaaacacagtggaaacacta
cagagaatgcacacgacatttgagcacgatatccaggccctgggcacccaggtgcgacag
ctgcaggaggatgcagcgcgcctccaggctgcctacgctggggacaaggccgatgacatc
cagaagagggaaaacgaggtcctggaggcatggaaggcactgctggatgcctgtgagggc
cgcagggtgaggctggtggacacaggagacaaattccgtttcttcagcatggttcgggat
ctcatgctctggatggaagacgttatccggcagatagaagcccaggaaaagccaagggac
gtttcatccgtggaactcctcatgaacaatcaccaggggatcaaagcggaaattgatgcc
cgaaatgacagcttcactacgtgcattgagcttggcaagtctctgctggccaggaaacac
tacgcatctgaggagatcaaggaaaagctcctgcagctgaccgaaaagagaaaagaaatg
attgacaaatgggaagacagatgggagtggctgagactgattttggaggtgcaccagttc
tccagagatgcaagcgtggctgaggcctggctgctgggccaggagccctacctgtccagc
cgtgaaatagggcagagcgtcgatgaggtggaaaaattaatcaagcggcatgaagcgttt
gagaaatccgcagctacctgggacgagaggtttgcagcgctggaaagactgaccacgctg
gaactgctggaagtccgtcggcagcaagaagaggaggagcggaagaggcagccgcccact
ccggagaccaaggctgaagaggatggagactcccagcagcaatgggatgggacaaaagga
gaacaggtttcccaaaacggtttgccctcagaccaggaatctccacgggtggcagaaacc
gcagaaaccaatgaaatggtcaatggagctgcagaacagaggacgagttccaaagagtcc
agtcccgttccttccccgacatcagaccgcaaagccaagagcggcgttcaggcccagact
gctgctaccctcccagccaaaacccaggagatcccctcagcccagatggagggcttctta
caccgcaagcacgagtgggagacacacagcaagaaagcctccagcaggtcatggcataac
gtgtactgtgtcataaacaaccaagagatgggcttctacaaggactcaaaagctgctgct
tctggcatcccctaccacaacgagatccccgtcagcttaaaggacgcagtctgcgaagta
gcggtcgattacaaaaagaagaagcatgtgttcaagctcagattgaccgatggcaacgaa
tacctcttccaagccaaagacgatgaggagatgaacacgtggattcaggccatcacatca
gcgatctcttcggacaaaatcgaagtgtccccgaccacccagagcactccagcctccagc
cgtgcccagaccctgcctgccagcgtcacaataaccagcgagtccagccctggcaagcgg
gagaaagacaaagagaaagacaaagagaaaagattcagcctttttggtaaaaagaagtga
DBGET
integrated database retrieval system
