Corvus cornix (hooded crow): 104691616
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Entry
104691616 CDS
T03546
Symbol
ATRX
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
104691616 (ATRX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccw03000
]
104691616 (ATRX)
03036 Chromosome and associated proteins [BR:
ccw03036
]
104691616 (ATRX)
Transcription factors [BR:
ccw03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
104691616 (ATRX)
Chromosome and associated proteins [BR:
ccw03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
104691616 (ATRX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
DUF6395
Motif
Other DBs
NCBI-GeneID:
104691616
NCBI-ProteinID:
XP_039428315
LinkDB
All DBs
Position
4A:17975528..18041737
Genome browser
AA seq
2491 aa
AA seq
DB search
MGGGGGGRRREAGPLRLPPIRWRRRWRWRRPRLCLRPAPERGPGPGGRSAPSSGGGVMTA
EPVSESKLNTLVQKLHDFLAHSSEESEDANSPPALSKNKSIGKSREPKGSPASMENSRDE
GSSSSERTKSLGLSRSKRKPTVVTKYVGSDDEQIVDETVNEDISNENSENDVDMQSLPKG
TVVVQPEPVLNEDKDDFKGPEFRSRNTVKMKPEAPKKRGEEGLHGIVSCTACGQQVNHFQ
KDSIYRHPTLKVLICKTCYKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKK
CILRNLGRKELSTILDENNQWHCYICHPEPLLDLVTACDSVFENLEQLLQQNKKKMKVEN
EKSKIYDHTVKFSPKRNNANCNGEEKKLDNSYSGSLTYSYKALMVPKDLLKKTKKLVETT
TNLNSSFVSFLKNAAENVEISPTVQLCQLKAFKSVLSDMKKAHLSLEEGLNLEIQALNVK
IKDKNTKEKKTEVRSEKNEVKKDEGKEHVALKEDDAVQTQKKVVSERPDSEPMDQSVPSV
EQTDNKAAPGEEKKSGRNEEPQYEPNSTEALDMDIVSIPSSVPEDIFETLESAMEIQMPS
DEQDSGNTAADHETLNPNTKLTTPVKDTKGGTKLKSSAKGTKELIVKLTPVSLSESTLKA
EDQDNSVEKDSKDVDASKDVDASQPRAANCDSVKQNHNVGSEPSTENEAVPVEDADLRRS
PRVKTTPLRRPTDISPLTSNSEEDSNDTSNEKRKRKSSKQPRRKNDKRNSSDSTADGPSP
NKLSKSKKPYDLDHSSDSDEMPAVLKEAGMMSRSSSDSESNSEVPANNQKTSDFQKSQPV
KDENGKRKRKSSSSGSDLDAKRGKSAKNAAAAKKKRQNYSDSSNYDSELEKEIKMLSKIE
AAKKSKKTYSQKDDSYDSSEEEQRKKVSSKRKVNLKKKRGKSSEDDDAEKSSPEKEINHS
SKDKKTGKRSAAKEKINRDSKEKSAKGKHDESSDVEKSSLEKEESPEVKKKKDLKKKKAQ
DDSSSESTEKSAKKEHKLESSKDRLKNKKGSESKAKQSEKLKKKGLKKEQGDSSSDLDKS
SPEKGSSNSSENDKIKKEPVFTEKRNLRERVAKRVHIDLSSDTEKSPQKEESSSDDAVRC
KKRTETKEKKKISHKKKISKKEQNDSSSSDEESYEDTKKKIKRGSVKESKKSNLKKKVAK
KKVVVTSSSSSDKEENDDQNSTGDGSSDEQKIRPVTESLMLSADAGFCQSSGDEGEALSR
TIPMEEEEDDDDDDPENRIAKKMLLEEIKANLSSDEDTSSDEQPEEGKKKPAKQTENTGD
DGENEKEDNKSEKEEGNSESDSEEEETSKKPRYRHRLLRHKLTVSDGESGEEKKVVKPKD
KKEGGKRRNRRKVSSDDSNDSEFHESAVSEEVSESEDDQRPRTRSAKKAEAEENQRSYKQ
KKKRRRIKVQEDSSSENENKSNSENEDNDDSKSPGKGRKKIRKIIKDDKLRTETQNALKE
EEERRKRIAEREREREKLREVIEIEDASPLKCPITTKLVLDEDEETKEPLVQVHRSIVTR
LKPHQVDGVQFMWDCCCESVKKTKTSPGSGCILAHCMGLGKTLQVVSFLHTVLLCDKLDF
RTALVVCPLNTALNWLNEFEKWQEGLEDEERLEVCELATVKRPQERSYMLQRWQDEGGVM
IIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIR
SRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTLVDVRV
MKKRAHILYEMLAGCVQRKDYTALTKFLPPKYEYVLEVRMTPIQCKLYQYYLDHLTGVGG
GNEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDEDSMDDFIASDSDETS
MSLSSDDYAKKKKSKGKKVKKECSSSGSGSDNDVEVIKVWNSRSRGGGEGNVEDLTNNPA
STKSDEGKATSSSNPGSPAPDWYKDFVTDADAEVLEHSGKMVLLFEILRMAEELGDKVLV
FSQSLISLDLIEDFLELANREKSDRDKPPIYKGEGKWFRNIDYYRLDGSTTAQSRKKWAE
EFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQNKPV
FVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNS
EKKKKRDTPMLPKDTILAELLQINKEYIVGYHEHDSLLDHKEEEELTEEERKAAWAEYEA
EKKGMTMRFNMPTGTNMIPTNFNSQTYIPYNLGALSAMSNQQLEDLINQGREKVVEATNS
VAAARIQPLEDIISSIWKENLTLTESQVQALALNRQASQELDVKRREAIYNDVLGKQQML
IGCVQRILMNRRLQHQYNQQQQQQMSYQQAAMGHLMMPKPPNLIMNPSSYPTIDVRGMYQ
SVSGGMQPPPLQRAPPPMRGKNPGPSQGKSM
NT seq
7476 nt
NT seq
+upstream
nt +downstream
nt
atgggaggcggcggaggaggacggcggcgggaggcaggtcccctcaggctccctccgata
agatggcggcggcgctggcgatggcggcggccgcggctttgtctgcgcccagcgcctgag
cgcggccccggccctggcggccgctccgctccgagcagcggcggcggagtcatgaccgca
gagcccgtgagtgaaagcaagttgaatactttggtacagaaactccatgacttcttggct
cactcatcagaagaatctgaggacgcaaactctcctccagcattatctaaaaacaaaagt
ataggtaaaagtagagaacctaaaggaagtccagcttcaatggagaacagtagggatgag
ggaagtagttcttcagaaagaaccaaatccttaggattatcccgttccaaaaggaaacct
acagttgtaacaaaatatgttgggtcagatgatgaacaaatcgtagatgaaactgtaaat
gaagatatttcaaatgagaactcagaaaatgatgtagatatgcaaagcttgcctaaaggt
acagtggttgtacagcctgagccagtgctgaatgaagacaaagatgattttaaagggcct
gaatttagaagcagaaataccgttaaaatgaaacctgaagctcccaaaaagcgtggagaa
gaaggactccatggaattgtaagttgtacagcttgtgggcagcaggtgaaccattttcaa
aaggattcaatctatagacaccctacactgaaagtgcttatatgtaagacttgctacaag
tattacatgagtgatgacattagtcgtgactcggatgggatggatgaacagtgtaggtgg
tgtgctgaaggtggaaatttgatttgctgtgacttttgccataacgccttctgtaaaaag
tgcattttgcgcaacctgggccgaaaggagctctcgactatcctggatgaaaataaccag
tggcactgctatatttgccatccagagcctttgttggacttggtcactgcgtgtgacagt
gtctttgaaaatttagaacagttacttcaacaaaacaaaaaaaagatgaaagttgaaaat
gaaaaaagtaaaatatatgaccacacggtcaagttttctccaaagagaaataatgcaaat
tgtaatggggaagaaaaaaaattagataattcatattcaggttcactaacatactcgtat
aaagcactaatggtgccaaaagacttgcttaagaaaacaaaaaaactggttgaaactaca
acaaatctgaattctagctttgtaagctttttgaaaaacgctgcagaaaatgtagaaata
agcccaactgtgcaactgtgccagctgaaagcttttaaatctgtgctgagtgacatgaaa
aaagctcatctgtcactagaagaaggcctgaacctggagattcaagcattgaatgttaaa
atcaaagataaaaataccaaagagaaaaaaactgaggttagatcagaaaaaaatgaggtg
aaaaaagatgaaggaaaggaacatgtggcattaaaagaggatgacgctgtacagacacag
aaaaaagttgtgtcggagcggcctgacagtgagcccatggatcaaagtgttccctcagtg
gaacagacagataacaaggcagctcctggggaagagaaaaagtctggcagaaatgaagaa
ccacagtatgagcccaacagtacagaggctttagacatggatattgtgtccatcccctcg
tctgttcctgaagatatttttgagactctggaatctgctatggagattcagatgccatca
gatgagcaggacagtggaaacacagcagcagatcatgagactctaaatccaaatacaaaa
ttgaccactcctgtgaaagataccaaaggtggtaccaagttaaaatcgtcagcgaaagga
acaaaagaattgattgtcaaattgactcctgtttccctttcagagtctacacttaaagct
gaagatcaagacaacagtgtagaaaaggacagtaaagatgttgatgcatctaaagacgtt
gatgcatctcaacctagagcagcaaactgtgattctgtaaaacaaaaccataatgttggc
agcgagccctccacggagaacgaggctgtgcccgtggaggacgcggatctccggaggtcg
ccgcgcgtcaagaccaccccgctgaggcgccccacggacatcagccccctgacatccaac
tcagaggaggacagcaatgacacgagcaatgaaaaacggaagagaaaatcatccaagcag
ccaaggaggaaaaacgataaaagaaattcttctgacagcactgctgatggtcctagtcct
aacaaactttccaaatccaaaaagccatatgacttagatcacagctcagactctgatgag
atgccagctgtccttaaagaggcagggatgatgagtcgcagctcctcagacagtgaaagc
aacagcgaagtgccagcaaataatcagaagacttcagattttcaaaagagtcaaccagta
aaggatgaaaacgggaaacgaaaaaggaaaagttccagttccggttcagatttagatgct
aaaagaggcaaatcagctaaaaacgctgctgctgctaaaaagaaacgacaaaactactca
gattcttcaaactatgattctgagttggaaaaagagataaaaatgttgagtaaaattgag
gctgcaaaaaaatcgaagaaaacatactcccaaaaagatgatagttatgattcgtctgaa
gaagagcagaggaaaaaagtaagcagtaagagaaaggtaaatctgaagaagaagagaggt
aaatcttctgaagatgatgatgctgagaagtcttccccagagaaggaaattaatcactct
tctaaagataaaaaaacgggtaagaggtcagctgctaaggagaagataaacagagactca
aaagaaaaatctgcaaagggaaaacacgatgagtcttctgatgttgagaagtcttcgctg
gagaaagaggagagtcctgaagttaagaaaaagaaggatttgaaaaagaaaaaggcacag
gatgattcttcttctgagagtactgagaaatctgcaaagaaagagcacaagttggagtct
tccaaagacagactcaagaacaaaaaaggatcggaaagcaaagcaaagcaatctgaaaaa
ctgaaaaagaaaggtttgaagaaagaacaaggtgattcctcttctgatcttgataagtca
tctccagagaaaggaagtagcaattcttctgaaaacgacaaaattaaaaaggaacccgtg
tttacagaaaagaggaatttgagagagagagtagctaaaagagtgcacattgatttatcc
tctgatactgagaaatctccccaaaaagaggagagttcttctgatgatgccgtgcggtgt
aaaaaacgaactgaaacgaaagaaaagaaaaaaataagccacaaaaagaaaatttccaag
aaagaacagaacgactcatcctcttctgatgaggagtcctatgaagacactaagaaaaag
attaaaagaggatcagtaaaagaaagtaaaaagagcaacttaaaaaagaaggtggcaaaa
aagaaggtggttgtcacttcctcttcctcgtctgataaggaagaaaatgatgatcagaat
tccacaggcgatggaagcagcgacgagcagaagatcaggccggtgaccgaaagcttgatg
ctgtctgctgatgcaggattttgtcagtcatcaggagatgagggagaggctctatcaagg
actatcccaatggaggaggaggaagatgatgatgatgacgaccctgagaatagaattgcc
aagaaaatgcttttagaagaaatcaaagccaatctttcctctgatgaggatacgtcttca
gatgagcagccggaggaaggaaagaagaaacctgcgaagcaaactgaaaacacaggagat
gatggagagaatgaaaaggaagacaataagtctgaaaaggaagaaggtaattctgagtca
gattcagaggaagaagaaacatctaagaagcccagatacagacacagactgctgaggcac
aagctcaccgtgagtgatggggaatctggagaagaaaaaaaggtggtgaaaccaaaagac
aaaaaagaaggggggaagcgcagaaatagaaggaaagtgagcagtgatgactcaaatgac
tccgagttccacgagtctgcagtgagtgaggaggtcagtgagtctgaggatgaccaacga
ccaaggacaagatctgccaaaaaagctgaggcagaagaaaaccagcgcagctacaaacag
aaaaagaaacgaaggaggataaaggttcaggaggattcgtcaagtgaaaatgagaataag
agtaactccgagaatgaggacaatgatgactcaaagtctcctggaaaaggcaggaagaaa
ataagaaaaattattaaagatgataaacttcgaacagaaacgcaaaatgcacttaaagaa
gaagaagaaagaagaaaacgtatagcagagagagaacgggagagagagaaattgagagag
gtgatagagatcgaagatgcttcacctctgaaatgtcccattacaaccaagctggtttta
gatgaagatgaagaaaccaaagaaccattagtgcaggttcacaggagtatagtgaccaga
ctgaaaccacaccaagtagatggtgttcagttcatgtgggattgctgttgtgaatctgta
aaaaaaaccaagacatctcctggctctggctgcattcttgctcactgtatgggcctgggg
aaaacattacaggtagtaagttttctccacacagtcttgctatgtgacaaactggatttt
cggacagctctggtcgtgtgtccactcaacactgccttgaactggctgaatgagtttgaa
aaatggcaagaaggtttggaagatgaggaaagactagaggtctgtgagctggcaactgtg
aaaaggcctcaggagaggagctacatgctgcagcgctggcaggacgagggaggtgtgatg
atcattggctacgagatgtaccgaaatctggcccaaggcaggaatgtgaagagtagaaaa
cttaaagaaatatttaataaagctttagttgacccaggtcctgactttgtggtgtgtgat
gaaggtcacatattgaaaaatgaagcatctgcagtctctaaggcaatgaattctattcgg
tctaggagaagaataattctgacagggacaccactgcagaataatcttatagaatatcac
tgcatggttaacttcattaaggagaatttgcttggctcaattaaggaattccggaatcga
ttcatcaatcccatccagaacggtcagtgcgcagactccactctggtggatgtcagagtg
atgaagaaacgtgctcacatcctctatgagatgttggctggctgtgttcagaggaaagat
tacacagcattaacaaagttcctgccccccaaatacgagtacgtgctcgaggtgcggatg
accccgatccagtgcaagctgtaccagtattacctggatcatttgacaggtgtaggtggt
ggaaatgaaggtggaagaggcaaagctggagctaaactattccaggatttccagatgttg
agcagaatctggactcacccttggtgtttgcagctggattatattagcaaagaaaataag
ggctattttgatgaagacagcatggatgacttcatagcttcagattccgatgaaacttcc
atgagcttaagttctgatgattatgcaaagaaaaaaaaatccaaggggaaaaaggtgaag
aaagagtgtagctcaagtggaagtggcagtgataatgatgttgaagtcattaaagtctgg
aattcaagatctcgtggaggtggggaaggaaatgtagaagatcttacaaacaaccctgca
tcaacaaagtcagatgaaggcaaagctacatcatcttccaatcctggtagcccagctcca
gactggtacaaagattttgtcactgatgcagatgctgaggtgttggaacattctgggaaa
atggtgcttctctttgaaattcttcgaatggcagaggagctgggagacaaagtcctagtg
ttcagccagtccctaatatctctggatttgatagaagatttcctggagctggctaacagg
gagaagtctgacagagataagcctcctatctataaaggtgaaggaaaatggttcagaaat
attgattattatcgcttggatggctcaaccacagctcagtccagaaagaaatgggctgaa
gagttcaatgatgaaactaatgtgagaggccgcttgtttatcatatccactaaagcaggt
tccctgggaataaacctggtggctgctaacagagtcatcatctttgatgcctcttggaac
ccctcctatgatatccagagcatcttcagggtttatcgctttgggcagaacaagcctgtg
tttgtctacaggtttttggctcagggaaccatggaggacaagatctacgaccggcaggtg
acgaagcagtcgctgtccttcagggtggtggaccagcagcaggtggagcgtcacttcacc
atgaacgagctcaccgagctctacaccttcgagccagacctgctggatgaccccaactcg
gagaagaagaagaagagggacacccccatgttgccaaaagacacgatcctggcagagctg
ctccagatcaacaaggagtacatagttgggtatcatgaacatgattcactcctggaccat
aaggaggaagaggaactcactgaagaagaaaggaaggcagcctgggcagaatatgaagca
gaaaagaagggcatgaccatgcgtttcaacatgccaacagggaccaacatgattcccaca
aatttcaactctcagacatatattccttacaacttgggtgctctgtcagcaatgagtaac
caacagctggaggacctcattaatcaaggaagagagaaggtagtggaagcaaccaacagt
gtggctgcagcgagaatccagccccttgaagacatcatttcatccatatggaaagaaaac
ttaaccctgacagagagccaggtgcaggccctggccctgaacagacaggcaagccaggag
ctggatgtgaagcgccgagaagccatttacaacgacgtcctcgggaaacagcagatgtta
atcggttgtgtccagaggatcctgatgaacaggcggctccagcaccagtacaaccagcag
cagcagcagcagatgtcctaccagcaagcagccatgggccacctcatgatgccaaagcca
ccaaatttaatcatgaatccttccagctacccaaccatagatgtgagaggaatgtatcag
tcagtgtctggtgggatgcagccaccacccctacaacgagcaccacccccaatgagaggc
aaaaatccagggccttcccaagggaaatcaatgtga
DBGET
integrated database retrieval system
