Corvus cornix (hooded crow): 104691764
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Entry
104691764 CDS
T03546
Symbol
CTCF
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccw03000
]
104691764 (CTCF)
03036 Chromosome and associated proteins [BR:
ccw03036
]
104691764 (CTCF)
Transcription factors [BR:
ccw03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104691764 (CTCF)
Chromosome and associated proteins [BR:
ccw03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
104691764 (CTCF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
zf-C2H2_ZN142
Zf-C2H2_ZNF451_C
zf-C2H2_7th_ZNF462
zf-met
zf-C2HE
zf-C2H2_6
Zf-C2H2_ZNF451
zf-C2H2_15
zf-WIZ
Motif
Other DBs
NCBI-GeneID:
104691764
NCBI-ProteinID:
XP_010401707
LinkDB
All DBs
Position
11:7147768..7183168
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AA seq
750 aa
AA seq
DB search
MKRTNQSRQKCRSVKNINQEGEMEGEAVDAIVEESETFIKGKERKTYQRRREGGQEDDAC
HIPPNQADGSEVVQDVSSGVQMVMMDQLDPTLLQMKTEVMEGAVPQETEATVDDTQIITL
QVVNMEEQPINLGELQLVQVPVPVTVPVATTSVEELQGAYENEVSKGGLQEGEPMICHTL
PLPEGFQVVKVGANGEVETLEQGELQPQEDPNWQKDPDYQPPAKKTKKNKKSKLRYTEEG
KDVDVSVYDFEEEQQEGLLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRR
SNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELV
RHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHM
RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK
QHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMVMHKRTHT
GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCS
GLDGGEGENGGETKKGKRGRKRKMRSKKEDSSDSEENAEPDLDDNEDEEETAVEIEAEPE
VEQEAPAPPPSKKRRGRPPGKAATQPKQSQPAAIIQVEDQNTGEIENIIVEVKKEPDAET
VEEEEEAQPAVVEAPNGDLTPEMILSMMDR
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaacaaatcagtccaggcagaagtgcagaagcgtcaagaacataaatcaggaa
ggtgaaatggaaggtgaggcagttgacgctattgtggaggaatcagagactttcattaag
ggaaaagagaggaaaacctatcaaagacgccgtgaaggtgggcaagaggatgatgcttgt
catataccaccaaaccaagcagatggaagtgaagtggtgcaggatgtcagcagtggggtg
cagatggtgatgatggatcagctggatccaactcttcttcaaatgaagaccgaagtaatg
gaaggtgcagtgcctcaggaaactgaggctactgtggatgacacacagatcataacactt
caggttgttaatatggaagagcagcctataaaccttggtgagcttcagctggtccaagta
cctgtaccagtgactgtacctgttgccaccacgtctgtggaagaactgcagggagcttat
gaaaatgaggtttccaaaggaggcctgcaggagggagagcccatgatctgtcacaccctc
cctttaccagaaggcttccaagtagtgaaagtgggtgcaaacggtgaggtggagacactg
gaacaaggtgaacttcagccacaggaagatcccaattggcaaaaagatccagactatcag
ccaccagccaaaaaaacaaagaaaaacaaaaagagtaagcttcgctacactgaggaaggc
aaagatgtggatgtctctgtgtatgactttgaagaggagcagcaggagggtttgttgtcc
gaggttaatgcagaaaaggtggtgggcaatatgaagccaccaaaaccaacaaaaattaaa
aagaaaggtgtaaaaaagacattccagtgcgagctgtgcagttacacttgtccgcgtcgt
tccaacttggaccgccacatgaaaagccacactgatgaaagaccacacaagtgccatctc
tgtggcagggctttccggacagtcacattgctgaggaaccacctcaacactcacacaggt
actcgccctcacaagtgcccagactgcgacatggcctttgtgaccagtggagagttggtt
cggcatcgccgctacaaacacacccacgagaaaccattcaaatgttccatgtgtgactat
gcgagtgtggaggttagcaaactgaaacgccacatccgttcgcacaccggagagcgcccg
ttccagtgcagcctgtgcagctatgccagcagggacacctacaaactgaagaggcacatg
aggacccactccggagagaagccatatgaatgttacatctgccatgctcgcttcactcag
agcggtaccatgaagatgcacattttgcagaagcacacggagaatgtggccaaattccac
tgtcctcactgtgatactgttatagcgagaaagagtgacctgggtgtccacttgcggaag
cagcattcctacatcgagcagggcaagaagtgtcgctactgtgatgctgtgttccatgag
aggtacgccctcatccagcatcaaaagtcccacaagaatgagaagcgcttcaagtgtgac
cagtgtgattatgcctgcagacaggagcggcacatggtcatgcacaaacggacccatact
ggagaaaagccttatgcctgtagccattgtgataaaaccttccgccagaagcagctcctc
gacatgcacttcaagagataccacgatcccaactttgtccctgctgcctttgtctgctcc
aagtgtggcaaaacattcactcgcaggaacacaatggccagacatgctgataactgctct
ggcctagatggtggggaaggagagaacggaggagagacaaagaagggcaaacgtggccga
aagagaaagatgcgttctaagaaagaagattcttctgatagtgaggaaaatgctgaacca
gatttggatgataatgaagatgaggaggagacagcagtagaaattgaggctgaaccagaa
gttgagcaagaggctcctgcaccacctcccagtaagaaaagaagaggaagaccaccaggc
aaagctgccacccaaccaaaacaatcccagcctgcagcaatcattcaggttgaagaccag
aacactggtgaaattgaaaatatcatagttgaagtgaagaaagaacctgatgcagaaaca
gtagaggaagaggaggaagctcagcctgctgtagtggaagctcccaatggagacctcacc
cctgagatgattctcagcatgatggaccggtga
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