Corvus cornix (hooded crow): 104692014
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Entry
104692014 CDS
T03546
Symbol
PTCH1
Name
(RefSeq) LOW QUALITY PROTEIN: protein patched homolog 1
KO
K06225
patched 1
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
104692014 (PTCH1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
Motif
Other DBs
NCBI-GeneID:
104692014
NCBI-ProteinID:
XP_010402038
LinkDB
All DBs
Position
Z
Genome browser
AA seq
1442 aa
AA seq
DB search
MASAGNASEPETSSSAGGGGHPXRAARNGGGRRRRTGGNRRAAAPDREYLQRPSYCDAAF
ALEQISKGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLRAAN
LETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPQEDGANVLTTEALRQHLD
SALQASRVHVYMYNRQWKLEHLCYKSGELITEAGYMDQIIEYLYPCLIITPLDCFWEGAK
LQSGTAYLLGKPPLQWINFDPLEFLEELKKINYQVESWEEMLNKAEVGHGYMDRPCLNPA
DPDCPITAPNKNSTKPLDVALVLSGGCYGLSRKYMHWQEELIIGGTVKNSSGKLVSAQAL
QTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRMYVEVVHQSVAQNSTQKVL
SFTTTTLDDILKSFSDVSAIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVALS
VAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGEC
LKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDL
YRREDRRLDIFCCFTSPCVTRVIQVEPQAYVENESTCYSPPPPYSSHSFAHETQITMQST
VQLRTEYDPHTQVYYTTAEPRSEISVQPVTVTQDNLSCQSPESTSSTRDLLSQFSDSSIH
CLEQPCTKWTLSSFAEKHYAPFLLKPRAKIVVIFLFLGLLGLSLYGTTRVRDGLDLTDIV
PRETREYDFIAAQFKYFSFYNMYIVTQKADYPNVQHLLYELHRSFSNVTYVLLEEDRQLP
KMWLHYFRDWLQGLQDAFDSDWETGKITYNNYKNGSDDAVLAYKLLVQTGNPAKPIDISQ
LTKQRLVDADGIINPNAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRL
RIPAAEPIEYAQFPFYLNGLRETSDFVEAIEKVRAICNNYTSLGISSYPNGYPFLFWEQY
IGLRHWLLLSISVVLACTFLVCALFLLNPWTAGIIVVVLALMTVELFGMMGLIGIKLSAV
PVVILIASVGIGVEFTVHVALAFLTAMGDRNHRAVLALEHMFAPVLDGAVSTLLGVLMLA
GSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGRDRLPTPSPEPP
PGTVRFALPPGHTHNASDSSDSEYSSQTTVSGISEELHQYEATQGPGAPVHQVIVEATED
PLFARSTVVQPEARHQPNPRLQSNPEPSTQQPWRQGRQPKREVREGLRPPPYRPRRDAFE
ISTEGHSGPSNRDRSGPKAHSQQREKPAFGATGTAGAAYCQPITTVTASASVTVAVHSAL
HSHSSRGASFPSYDGHREAGHAPFEDPHVPFNVRCERRNSKVEVIELQDVECEERTTGNS
SQ
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggccggtaacgcgtcggagccggagaccagcagcagcgcgggcggcggaggc
cacccgngccgggcggcgaggaacggcggcggaaggcggcgaaggactggagggaatcgg
cgcgccgcggcgcccgaccgggagtatctgcagcggccaagctactgcgatgcggctttc
gccttggagcagatttcaaaggggaaggcgacgggacggaaagcgccgctgtggctgaga
gcaaagtttcagagactgttgtttaaactgggctgttacattcagaaaaactgcgggaag
tttttggttgtcggcctcctgatatttggggctttcgctgtaggattaagggcagctaat
ctcgagaccaacgtggaggagctgtgggtggaagttggtggacgagtgagtcgggagtta
aattacacacggcagaagattggagaagaggccatgttcaacccccagctcatgatccag
actccacaggaagatggtgctaatgtactaacaacagaagcactccgacagcaccttgac
tctgcgcttcaggccagcagagtacatgtctatatgtacaacagacagtggaaattggaa
catttatgttacaaatcaggagaactcatcacagaagcaggttacatggaccagatcata
gaatatctttatccttgcttaattatcactcctttggactgcttctgggagggagcaaag
ctacagtcaggaactgcctatctattagggaagcctcctttgcagtggatcaactttgac
cctttagaattcttggaagagttaaagaaaataaactaccaagtggagagctgggaagaa
atgctgaataaagcagaggttggtcatggttatatggatcgaccctgcctgaatcctgct
gatcccgattgcccaatcacagctcccaataaaaattccaccaaacctcttgatgtagcc
cttgttttgagtggtggatgctatggactatcaagaaaatacatgcattggcaggaggag
ctgattataggtggtacagtcaagaacagttctggtaaacttgtcagtgcccaggctttg
caaaccatgtttcagttaatgacccctaagcaaatgtatgagcatttcaaggggtatgaa
tatgtttcgcatatcaactggaatgaggacaaggcagcagcaattctggaagcctggcag
aggatgtatgttgaggttgttcatcaaagtgttgcacaaaactctactcagaaggtgctc
tcctttactacgaccaccctggatgacattttgaagtcattttctgatgtcagtgctatc
agagtagctagtggctacttactaatgcttgcctatgcctgtttaacgatgctgcggtgg
gactgtgccaagtctcagggtgctgtggggctggcaggagtcttgttggttgcactctcg
gtggctgcaggattgggcctgtgctcattgattggaatttcctttaatgctgccacaact
caggttttgccttttcttgctctgggagttggtgtagacgatgttttccttctggcacat
gcatttagtgaaacaggacagaataagagaattccatttgaggacagaacaggtgaatgt
ttgaagcgaacaggagcaagtgtagcccttacatctatcagcaatgttactgctttcttt
atggctgccttaattcctattccagctttaagagcattttcactccaagcagcagttgtg
gtggtgttcaattttgctatggttctgctgattttccctgctatcctgagcatggacctt
tatcgtcgggaagacaggagactggacatattttgctgttttacaagtccatgtgtcact
agagtgattcaggttgagcctcaagcgtatgtggaaaacgagagtacttgctacagtcct
ccacccccatacagcagccacagttttgcacatgaaactcagattacaatgcaatccaca
gtgcagctgcgcacagaatatgatcctcacacgcaggtgtactacaccacagcagagcct
cgctcagaaatatctgtgcagccagtgacagtgacacaagacaacctgagctgccagagc
ccagaaagcacaagctcgacgagggacttactttcccaattctcagactccagtatacac
tgccttgagcaaccctgtacgaagtggacactctcatcttttgcagaaaagcattatgct
ccattcctcctaaaaccaagagccaagattgtggttatttttctttttctgggtttactt
gggctcagcctctatggaactacccgggtgagagatggactagatctcacagacattgta
ccacgggaaacacgggaatatgacttcattgctgcacagttcaaatacttttcattctac
aacatgtatattgtgacacagaaagcagactatccaaatgtccagcacttactttatgaa
cttcacagaagtttcagcaatgtgacatatgttttgttggaagaggacaggcagctcccc
aaaatgtggttgcactactttcgagactggctgcaaggccttcaggatgcatttgacagt
gactgggagactgggaagatcacttacaacaactataaaaatggttctgatgatgctgtt
ttggcttacaaactcttggtacaaacaggcaaccctgcaaagcccattgacatcagccag
ttgactaagcagcgtctggtggatgccgatggaatcattaacccaaatgctttctacatc
tacctgacagcctgggttagcaacgaccctgtggcctacgctgcctcgcaagctaacatc
cgcccgcaccgcccggagtgggtccatgacaaagcagactacatgccagaaacaaggctg
agaattccagcagctgagcccatagaatacgctcagtttcctttctacctcaatggattg
cgtgaaacttctgactttgtggaggctattgagaaagtgagagctatctgtaataactac
accagcctggggatctccagctacccaaatggttacccatttctgttctgggagcagtac
attggacttcgtcactggctcctcttatccattagcgtggttttagcttgcacgtttctg
gtgtgtgccctcttcctcctaaacccctggacagctgggatcattgtggtggtgctggct
ctgatgactgtggagctgtttggcatgatgggtctaattggaataaaactgagtgcagtg
cctgtggttatcctgattgcttctgttggcattggtgtggaattcaccgttcatgttgct
ttggcgtttttaactgccatgggagacaggaaccatagggctgtccttgcactggaacac
atgtttgcaccggtgctggatggggctgtgtctactctgcttggcgtgttaatgcttgca
ggatcagagtttgattttattgtcaggtatttctttgctgttttggcaatcctaaccatt
ctgggagttctcaatggattggtgctgcttcctgttcttctctcattctttggaccatac
cctgaggtttctccagccaacggacgtgacagattgcccacaccatctcctgagccaccc
cccggtaccgtcaggtttgcactgccacctgggcacacacataatgcttcggattcctct
gattctgagtacagctctcaaaccaccgtgtctggcatcagtgaagagcttcatcagtac
gaggccacgcaaggtcctggggcaccagtccatcaagtaatagtggaagcaactgaggat
cctctctttgcaagatccactgtggttcagccggaagcaaggcatcagccgaatcccagg
ctgcaatcaaatccagagcccagcacacagcagccatggcgtcagggcagacagcccaaa
agggaagtgagggaagggctgcgaccacctccttaccgccctcgcagggatgcttttgaa
atttctactgaagggcactcgggacccagcaacagggatcgctcaggccccaaggctcat
tcccaacagcgtgagaagccggctttcggggccacgggcactgcaggagcagcctactgc
cagcctatcactactgtgacggcctcggcttccgtcactgttgctgtccactctgccctg
cacagccacagctcccggggagcgagctttccatcctacgacggacaccgtgaagctggc
catgcaccgtttgaggacccacatgtgccttttaatgtgcggtgtgaaagaagaaattcg
aaagtagaggttatagaactgcaagatgttgaatgtgaggagaggacaactggcaacagc
tcacagtaa
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