Corvus cornix (hooded crow): 104693278
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Entry
104693278 CDS
T03546
Symbol
CHD5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X3
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccw03036
]
104693278 (CHD5)
Chromosome and associated proteins [BR:
ccw03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
104693278 (CHD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104693278
NCBI-ProteinID:
XP_010404138
LinkDB
All DBs
Position
21:3012852..3036696
Genome browser
AA seq
1642 aa
AA seq
DB search
MIQCGERKRDRGEEGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEG
KWSCPHCEKEGIQWEPKEEEEEEEDGGEEEEDDHMEFCRVCKDGGELLCCDTCPSSYHLH
CLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWAWKEPPAAPLPPVLPAADPELALPPP
KVLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKNDMDEPPAFDYGSGD
EDSQREKRKNKDPQYAKMEERFYRYGIKPEWMMIHRILNHSFDKKGDIHYLIKWKDLPYD
QCTWEIDDIDIPYYENLKLLYWNHRELMLGEDTRPLKKLNKKGKKLKEEKLEKPPETPLV
DPTVKFDKQPWYIDATGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLY
SLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDN
AIRSGKKVFRMKKEAQIKFHVLLTSYELITIDQAVLGSIEWACLVVDEAHRLKNNQSKFF
RVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKL
HDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQV
SLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVKSSGKLMLLQKMLKKLRDGG
HRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLST
RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ
VAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGMVSQGQRIAVPDA
VTPFSDTLSTKGGAATPGMKKKHGGTPPGDNKDVDDSSVIHYDDAAISKLLDRNQDATDD
TELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDL
ARNLGKGKRIRKQVNYNDTSQEDQEWQDELSDNQSEYSIGSEDEDEDFEERPEGQSGRRQ
SRRQLKTDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRD
LRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQ
EFEHVNGKYSTPDLVLEGPESKRSSEVVSSDPNTPVPASPAHTHTGPGALADKIEAQLGF
HEEKDPVEQKPRKVIDSQVPASAEVESEEHPESCDSKERPREEKQEDCEKAEPSSEPLVK
GLFPPADEGIQEQEKPLEKAELSSSPGKGEDKEVKPEDGKEEEKEQSDAQQNGDKEEEEE
GKKDDRNMNFRFMFNIADGGFTELHTLWQNEERAAMSSGKIYDIWHRRHDYWLLAGIVTH
GYARWQDIQNDPRYVILNEPFKSEIHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAY
LNMTQDPSHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDM
KADVTRLPSMLSRIPPVAARLQMSERSILSRLATRGGDPAAQGSFGSSQIFNNNFGPNFR
GPGPGGIVNYSQMPLGPYVTDI
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atgatacagtgtggagagagaaagagagacagaggcgaagagggagacgggtacgagacg
gaccaccaggactactgtgaggtgtgccagcagggcggggagatcatcctgtgcgacacc
tgcccccgtgcctaccacctggtctgcctggaccccgagctggagaaggcccctgagggc
aagtggagctgcccccactgtgagaaggagggcatccagtgggagccaaaggaggaggag
gaggaggaagaggatggtggcgaggaggaggaggatgaccacatggagttctgccgggtc
tgtaaggacggaggggagctgctgtgctgtgacacctgcccatcctcctaccacctccac
tgcctgaacccgccgctgccagagatcccaaacggtgaatggctctgcccacgctgtaca
tgccctcccttgaagggcaaagtccaacgcatcctgcactgggcctggaaggagccaccg
gctgccccgctcccacctgtgctgcccgccgcggacccggagctggctctgcccccgccc
aaggtgctggaggggatcccggagcgcgagttctttgtgaagtgggcaggcctctcctac
tggcactgctcctgggtcaaggagctgcagctggagctgtaccacaccgtgatgtaccgc
aactaccaacggaagaatgacatggatgagccaccagccttcgactacggctctggggac
gaggacagccagagggagaagcggaagaacaaggacccccagtatgccaagatggaggag
cggttctaccgctatggcatcaagcctgagtggatgatgatccaccgcatcctgaaccac
agctttgataaaaagggagacatccattacctgatcaagtggaaggacctgccctatgac
cagtgcacctgggagatcgatgacatagacatcccctactacgagaacctcaaactcctc
tactggaaccacagggagctgatgctgggggaggacacacgccctctgaagaagctgaac
aagaaagggaaaaagctgaaagaggagaagctggaaaagcctccagaaacacctcttgtg
gatcctacggtgaagtttgacaagcagccgtggtacatcgatgccacaggaggcacgctg
cacccttaccagctggaagggctgaactggctgaggttctcctgggcacaagggacagat
acaatcctggctgatgagatggggctggggaagacggtgcagaccattgtgttcttgtac
tccctgtacaaggagggccactcgaaagggccgtacctagtcagtgcccccctctccacc
atcatcaactgggagcgtgagtttgagatgtgggcacctgatttctacgtcgtgacctac
acgggggacaaggagagccggtcggtgatccgggaaaatgagttttcttttgaagacaac
gccatacggagtgggaagaaggtcttccggatgaagaaggaagcccagatcaagttccat
gtcttgctcacgtcgtatgagctgatcaccattgaccaggctgtgctgggctccatagag
tgggcctgtctggtggtggatgaagcacacaggctgaagaacaaccagtccaaattcttt
agagtactgaatagctacaagatcgattacaagctgcttctcacagggactccgcttcag
aacaacctggaagagctcttccacctgctcaatttcctgactccagagaggtttaacaac
ctggaggggttcctggaggagtttgcagacatctcaaaggaggaccagatcaaaaagctc
catgacctgctgggtccccacatgctgcggcggctcaaggccgatgtgttcaagaacatg
ccggccaagacggagctgatcgtgcgagtggagctgagccagatgcagaagaagtactac
aaattcatactgacgaggaacttcgaagccctgaattcgaaaggtggtgggaaccaggtc
tcactgctcaacatcatgatggacctgaagaagtgctgcaatcacccatacctgttccct
gtggcagctgtggaggccccggtgctgcccaatggatcttatgacgggaattctttggtc
aaatcttctgggaaactgatgctgctccaaaagatgctgaagaagttacgggatgggggt
cacagagttctgatcttctcgcagatgacaaagatgctggatttgctggaggatttcctg
gagtatgaaggctacaagtacgagcggatcgatgggggcatcaccggcggcctgcgccag
gaggccatcgacaggttcaatgctcctggggctcagcagttctgcttcctcctctccacc
cgcgccggtggtctgggcataaaccttgctacggccgacactgtcattatttatgattct
gactggaatccccacaatgacatccaggcgttcagcagagctcaccgcatcgggcagaac
aagaaggtgatgatttaccgcttcgtgaccagggcctctgtggaggagcgcatcacccag
gtggccaaaaggaagatgatgctcacccacctggtggtccgcccggggctcggctccaag
tcgggctccatgaccaagcaagagctggacgacatcctcaagtttgggacagaagaactc
ttcaaggatgatgtggagggcatggtgtctcagggacagcggattgccgtgccagatgct
gttacccctttctcggacacgctctcaacaaaagggggtgcagcaactcctggcatgaaa
aaaaagcatggtggcaccccaccaggtgacaataaggatgtggatgacagcagtgtgatc
cactacgatgatgctgccatctctaagcttttggaccgaaaccaggatgcgactgacgac
acggagctgcagaacatgaatgagtatctcagctcctttaaagtggctcagtatgttgtg
agagaagaggacggtgtggaggaggtggaacgtgagatcatcaagcaagaggagaatgtg
gaccctgactactgggagaagctgctgcggcaccactacgagcagcagcaggaagatctg
gccaggaacctggggaaagggaagagaatccgcaagcaggtcaactacaatgacacatca
caggaggaccaagagtggcaggacgagctctctgacaaccagtcagagtattccattggc
tctgaggatgaggacgaagactttgaagagaggccagaaggccagagtggcagaagacaa
tcccggagacagctgaagactgacagagacaaacctctacctcctttgctggcaagagtt
ggggggaacatcgaggttctgggcttcaacgcccggcagcgcaaggcgttcctgaatgcc
atcatgcgctggggaatgccgccccaggatgccttcaactcccactggctggtccgggat
ctgcgagggaagagcgagaaggagttcagggcgtacgtctctctcttcatgagacacttg
tgtgagcccggggcagacggtgccgaaacctttgcggacggcgttccccgggaagggctg
tcgcgccagcacgtgctgactcgcatcggggtcatgtcactagtaaggaagaaggtccag
gagttcgagcatgtcaatgggaagtacagcaccccagacctggttcttgagggcccggag
agcaagagatccagtgaggttgtgtcttcagatcccaacacgcctgtcccggccagccca
gcacacacacacacgggaccaggggcccttgcagacaaaatagaagcacaactggggttc
catgaggaaaaggacccggtggagcagaagcccagaaaggtgattgacagccaggtgcct
gcaagtgccgaggtggagagcgaagagcacccggagagctgtgacagcaaggagaggcca
agggaagagaagcaagaggattgtgaaaaggctgagccttcttctgagcccctggtgaaa
ggcctgttccctcctgccgacgaggggattcaagagcaagagaagcctttggagaaggcg
gagttgagcagcagcccagggaagggggaggataaagaagtcaaaccagaggatggcaag
gaggaggagaaggagcaaagtgatgcccagcaaaatggtgacaaagaggaagaggaggaa
ggaaagaaggatgacagaaacatgaacttcagattcatgttcaacattgccgacggtggc
ttcacagagctgcacacgctgtggcagaacgaggagagggctgccatgtcctctggcaag
atctatgacatctggcaccgccgacacgactactggctgttggcaggaattgtcactcat
ggctatgcccgctggcaggacatccagaatgacccacgctacgtgatcctcaatgagccc
ttcaagtcggagatacacaaggggaactacctcgagatgaagaacaagttccttgcccgg
cggttcaagttgctggagcaggccctggtgatcgaggagcagctgcggagggcggcgtac
ctcaacatgacccaagaccccagtcacccggccatggcgctcaacgcgcggctggcagaa
gtggagtgccttgccgagagccaccagcacctctccaaagagtccctggctgggaacaag
cctgccaacgctgtcctgcacaaggtgttgaaccagctcgaggagctgctgagtgacatg
aaggctgatgtgacacgcttgccctctatgctgtcccgcatcccgcccgtggccgcccgg
ctgcagatgtcagagcggagcatcctcagccgcctggccacccgtggaggggatccagct
gcccagggctcctttggctcctcccagatcttcaacaacaactttgggccaaatttccgt
ggtcctgggccaggtgggattgtcaactacagccagatgcctctgggaccctatgtgact
gatatttag
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integrated database retrieval system
