Corvus cornix (hooded crow): 104693444
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Entry
104693444 CDS
T03546
Symbol
TRIP12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104693444 (TRIP12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccw04121
]
104693444 (TRIP12)
Enzymes [BR:
ccw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
104693444 (TRIP12)
Ubiquitin system [BR:
ccw04121
]
Ubiquitin ligases (E3)
HECT type E3
104693444 (TRIP12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
UNC45-central
HEAT_2
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
104693444
NCBI-ProteinID:
XP_039412895
LinkDB
All DBs
Position
9:15296045..15375794
Genome browser
AA seq
2065 aa
AA seq
DB search
MSNRPNNNPGGSLRRSQRNTAGAQPQDDAVGGRSHLGQAKHKAHSPPESRKSISKTPKVQ
SNTTSEQSKGHFSKRGCSSSAVLIPQEDPERVNTSEKQKTGQVPKKDNSRGVKRSASPDY
RRTNSPSSAKKPKALQHTETSSETNKPHTKSKRRHSDQEQPKSTQLPSTSKAHTRKGGAA
GSSRSQKRKRTENLSCIKSGSSVESTGTEEKSAKVSKLASKSVTSAKAGCSTITDSSSSA
STSSSSSAVASASSTVPQGARVKQGKDQSKARRSRSASSPSPRRSSRDKEPSKTGGSSKF
DWAARFSPKVSLPKTKLSLPGSSKSETSKPGPSGLQAKLASLRKSTKKRSESPPAELPSL
RRSTRQKTTGSCASTSRRGSGLGKRGAAEARRQEKMADPDNNQDGVNSSAARTDEPPQGA
AASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGSG
ASSKAQQLLQGLQATDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN
FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS
KAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLTHQ
DKKSVESTCLCFARLVDNFQHEENLLQQVASKDLLTNIQQLLVVTPPILSSGMFIMVVRM
FSLMCSNCPTLAVQLMKQNIAETLHFLLCGASNGSCQEQIDLVPRSPQELYELTSLICEL
MPCLPKEGIFAVDTMLKKGNAQNTDGAIWQWRDDRGLWHPYNRIDSRIIEAAHQVGEDEI
SLSTLGRVYTIDFNSMQQINEDTGTARAIQRKPNPLANTNTSGHSELKKDDARAQLMKED
PELAKSFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLKNHAVSSHI
ASMLSSQDLKIVVGALQMAEILMQKLPDIFSVYFRREGVMHQVKNLAESEALLTSPPKVC
TNGSGTLGTTTTISTGTATAASNAAADLGSPSLQHSREDSLDLSPQGRLSDVLKRKRLPK
RGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGRLSTQSNSNNIEPART
AGVSGLARAASKDTISNNREKIKGWIKEQAHKFVEHYFSSENMDGSNPALNVLQRLCTAT
EQLNLQVDGGTECLVEIRSIVSESDVSSFEIQHSGFVKQLLLYLTSKSEKDAVSRDIRLK
RFLHVFFSSPLPGEEPLGRLEPLENAPLLALVHKMNNCLSQMEQFPVKVHDFPSGNGTGS
SFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGY
GRVREDDEDSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYIGDHLLPYNMTVYQAVRQYS
LQAEEERESTDDESNPLGRAGIWTKTHTIWYKPVREDEDGNKDCVGGKRGRAQTAPTKTS
PRNSKKHDELWHDGVCPSVLNPLEIYLVSTPPENITFEDPSLDVILLLRVLHAISRYWYY
LYDNAVCKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTR
QMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTVNRDELLKQAESVMQ
DLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLANPKGSQEGT
KYIHNLQGLFALPFGRTAKPAHIAKVKMKFRFLGKLMAKAIMDFRLVDLPLGLPFYKWML
RQETSLTSHDLFSIDPVVAKSIYHLEDIVRQKKRLEQDKTQTKESLQYALEALTMNGCSV
EDLGLDFTLPGFPNIELKKGGKDTPVTIHNLEEYLRLVIFWALNEGVARQFDSFRDGFES
VFPLSHLQYFYPEELEQLLCGSKTDTWDAKTLMECCRPDHGYTHDSRAVKYLFEILSSFD
SEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPD
YSTIEIMREKLLIAAREGQQSFHLS
NT seq
6198 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaataacaatccaggggggtcactgcgacgttcacagaggaacact
gccggggcccagccacaagacgacgcagtaggaggaaggtcacatttagggcaggcaaaa
cataaggcacatagccctcctgagagtagaaaatctatttcaaagacacccaaagtgcag
tctaatactacttctgagcagtccaagggacacttttctaaaagaggctgtagttcatct
gctgttttaataccacaagaagatccggagagagtcaatacttcagaaaagcaaaaaacg
gggcaagtgcctaagaaagacaattctcgcggagttaaacgcagtgctagtccagattac
aggaggaccaattctcctagctctgctaaaaaacccaaagcacttcaacatactgaaact
tcctcagaaactaacaagccacatactaaatctaagagaagacactcagaccaagagcag
cccaagtctacacaattgccatcaacaagcaaggctcacaccagaaagggtggagctgct
ggtagctcccgaagtcagaaaaggaaaaggacagagaatctgtcttgtataaagagtggg
tcatcagttgaatcaactggcactgaagaaaagtcagcaaaagtctccaagctggcttca
aaatcggtgacctcagccaaagctgggtgtagcaccatcaccgattcttcttcttcagct
tccacctcctcctcctcttctgctgttgcctctgcttcttctactgttcctcagggtgcc
agagtgaaacagggaaaggaccagagtaaggctagacgttcccgttccgcatccagcccc
agtccaagaaggagtagcagggacaaagaaccgagtaaaacaggtggctcttcaaagttt
gactgggctgctcgattcagcccaaaagtcagtctccctaaaacaaaactgtctctacca
ggctcttccaagtcggagacatcaaaacctggaccttcaggactacaggctaagctagca
agtctaagaaaatctacaaagaagcgcagtgaatcaccacctgctgagctccccagttta
cggcggagcacacggcaaaagaccacgggctcctgtgctagcaccagtcggcgaggctct
ggcctgggcaaaagaggagcagctgaagctcgccgacaggagaagatggctgatcctgac
aacaaccaggatggagtcaactcttcagctgcacgaacagatgagcctccccagggagct
gcagcttctagttctgttgctggagctgtaggtatgacaacttctggagagagtgagtca
gatgattctgagatgggaagactacaagctctattagaggctaggggtcttcctcctcac
ctgtttggccctcttggtcctcggatgtcgcagctcttccacaggacaattggaagtgga
gctagttctaaagctcaacagcttttacaaggtctccaagccactgatgaaagtcagcaa
ctacaggcagtgattgagatgtgccagctgttggttatggggaatgaagaaacgttagga
ggatttccagtcaagagtgttgtaccagctttgataacactcctgcagatggagcacaac
tttgacattatgaatcatgcatgtcgggccttaacatacatgatggaagcacttcccaga
tcatctgctgtagtggtagatgcaattcctgtcttcttggaaaagctgcaagttatccag
tgcattgatgtggcagagcaggcgcttacagccctggagatgttgtcacgcaggcacagt
aaagccattctgcaggcaggtgggttggcagactgtttgctgtatctggaattcttcagt
ataaatgcacaaaggaatgcactagctatcgctgccaactgctgccagagtataacgcct
gatgagtttcactttgtggcagactctttgccactgctaacacaaaggttaacccatcag
gacaaaaagtctgttgaaagcacttgtctctgttttgcacggctagtggacaacttccag
catgaagagaacttgctgcagcaggttgcttccaaggacttgttaacaaatatccagcag
ctcttggttgtgacacctcctatcctgagctcaggaatgttcatcatggtggtgcgcatg
ttctccctgatgtgctccaactgccccacacttgcagtccagcttatgaagcaaaatatt
gcagaaacgcttcacttcctcctttgtggagcctcaaatgggagttgtcaagaacaaatt
gaccttgttccacgaagtcctcaagaactttatgaacttacttctcttatctgtgaactg
atgccttgcctgccaaaagagggaatctttgctgttgatactatgctaaagaaaggaaat
gcacaaaatacggatggtgcaatatggcaatggcgagatgacaggggtctctggcatccg
tataacaggattgatagtcgaataatagaggcagctcatcaggttggtgaggatgagata
agcctgtctacacttgggcgtgtctatactattgattttaactctatgcagcaaataaat
gaggatactggaacagcccgtgccattcagcgaaaaccaaaccctttagccaatacaaac
actagtggacattcggaattgaagaaggatgatgctcgagcacagttaatgaaagaggac
ccagaactggcaaaatcctttatcaaaacattgtttggtgttctttatgaagtatatagt
tcttcagctggacctgctgttagacacaagtgccttagagcaattcttaggataatttat
tttgctgatgctgaacttctgaaggatgtgctgaaaaaccatgctgtttcaagtcatatt
gcctccatgctgtcgagtcaagaccttaagatagtagttggagccctgcagatggcagag
attttaatgcaaaagttacctgacatttttagtgtttacttcagaagagaaggggtaatg
caccaagtgaaaaacttggcagagtctgaggctttgctaacaagcccaccaaaagtatgc
actaatggatcaggaacgctgggtaccactacgacaataagtactgggacagccactgct
gccagcaatgcagctgcagatttgggctctcccagcttacagcacagccgggaggattcc
ttggatctgagcccacagggacgactgagtgatgttctaaagagaaaaagactgccaaaa
cgagggccaaggagaccaaaatattcccctccaagagatgatgacaaagtagacaatcaa
gctaaaagccctacaactactcagtctcctaaatcttctttcttggcaagtttaaatcct
aagacatggggaagattaagcacacaatccaacagtaataatatcgaaccagcacgaaca
gcaggagtaagtggtcttgcaagggctgcttccaaggataccatttccaataacagagaa
aaaattaagggctggattaaggagcaagcccataaatttgtagaacattactttagttct
gaaaacatggacggaagcaatcctgcactaaatgtattacagagactttgcactgcaact
gaacaactcaacctccaggtggatggtggaacagagtgccttgtagaaatccgtagcatt
gtctcggaatctgatgtctcctcatttgaaatccagcatagtgggtttgttaaacaactg
ctgctttacttgacatctaaaagtgaaaaagatgctgttagcagggatatcagattgaaa
agatttcttcatgtatttttttcctctccacttcctggagaagagccccttggaagatta
gagccattagaaaatgcacctttgttggcattagtccataaaatgaataactgcctcagt
cagatggaacagtttcctgttaaagtgcatgacttccctagtggaaatggaacagggagc
agtttttctcttaacagaggatcgcaagctttaaaattcttcaatacacatcaattaaaa
tgccaactgcaaagacatccagactgtgctaatgtgaaacagtggaaaggtggccctgtg
aagattgatcctctggctttggtacaagccattgaaagataccttgtagttagaggctat
ggaagagttagagaagatgatgaagatagtgatgatgatgggtcagatgaagaaatagat
gaatctttggctgctcaattcttaaattcagggaatgtgagacatagattgcagttttac
attggagatcacttgctaccatacaatatgactgtatatcaagcagtcaggcagtacagt
ttgcaagctgaggaagagagggaatctacagatgatgaaagcaacccattgggaagagct
gggatttggacaaaaacacacaccatttggtacaaacctgtgcgagaggatgaagatggt
aataaggactgtgttggtggtaaaagaggaagagcacaaactgctcccacaaaaacctcc
cctcgaaattctaaaaaacatgatgaattgtggcatgatggtgtatgcccttcggtatta
aatcctctggaaatttacctcgtatctactccacctgaaaatataacatttgaagacccc
tcactagatgttattcttcttttgagagttttacacgctatcagtcgatactggtattac
ttgtatgataatgcagtctgcaaggagataattccaacctcagagtttatcaacagtaaa
ctgacagcaaaagcaaacaggcagcttcaggaccctttggtaattatgacaggaaacatc
ccgacttggctgacagaacttggaaaaacatgcccatttttctttccatttgatacccgc
caaatgctgttttatgtgacagcctttgaccgcgatcgagccatgcaaagactactggat
actaatccagaaatcaatcagtcggattctcaggatagcagagtggcaccgcgactggac
aggaaaaaacgcactgtgaacagagatgagctgttgaaacaggcagaatctgtgatgcag
gatctaggcagttcaagagccatgttggaaatccagtatgagaatgaagttggcacaggc
ctaggccctacactagagttctatgcacttgtatctcaggaactacagagagcagactta
ggcctttggaggggagaagaagtgactttagccaatccaaaaggaagccaggaaggtacc
aagtacattcataaccttcaaggcctttttgcacttccttttggtagaacagccaagcca
gctcacattgcaaaagttaaaatgaagttccgctttctgggaaaactaatggccaaggca
atcatggacttcagactggtggaccttcctcttggacttcctttttataaatggatgcta
cgacaggaaacttccttgacttcgcatgacttgttcagtattgatccagtagtagccaaa
tcaatatatcaccttgaagatattgtaagacaaaagaaaagacttgaacaggataaaact
cagaccaaagaaagtctacagtatgcattggaggctctgactatgaatggctgctcagtg
gaagatctcgggctggacttcacacttcctgggtttcccaatatagagctgaaaaaaggg
ggaaaagatacaccggtcactatccacaatttagaggagtatctcagattagttatattc
tgggcactaaatgaaggtgttgccagacagtttgactccttcagagatggatttgagtcg
gtcttcccccttagtcatcttcagtacttctatcctgaggagttggagcagctcttgtgt
ggcagcaagacagacacttgggatgcaaagactttaatggaatgttgcaggcctgatcac
ggttatacacatgacagtcgagcagtgaagtatctctttgaaattctcagtagtttcgat
agtgagcagcaaagactgtttcttcagtttgtgacaggcagccccagactgcctgtagga
ggtttccgaagtttgaatcctcccttgacgattgtacggaagacatttgagtccacagag
aatcccgatgatttcttaccctcagtaatgacttgtgtgaactatctcaaattgccggac
tattcaactattgagataatgcgtgaaaaactcttgatagctgcaagagaagggcagcag
tcattccatctttcctga
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integrated database retrieval system
