Corvus cornix (hooded crow): 104693453
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Entry
104693453 CDS
T03546
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03008
Ribosome biogenesis in eukaryotes
ccw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104693453 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
104693453 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccw03019
]
104693453 (XRN1)
03009 Ribosome biogenesis [BR:
ccw03009
]
104693453 (XRN1)
03016 Transfer RNA biogenesis [BR:
ccw03016
]
104693453 (XRN1)
03036 Chromosome and associated proteins [BR:
ccw03036
]
104693453 (XRN1)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104693453 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
104693453 (XRN1)
Ribosome biogenesis [BR:
ccw03009
]
Eukaryotic type
Pre-60S particles
RNases
104693453 (XRN1)
Transfer RNA biogenesis [BR:
ccw03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
104693453 (XRN1)
Chromosome and associated proteins [BR:
ccw03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104693453 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
104693453
NCBI-ProteinID:
XP_039413261
LinkDB
All DBs
Position
9:14931259..14973266
Genome browser
AA seq
1770 aa
AA seq
DB search
MGVPKFYRWISERYPCLSQVLKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKI
FANIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALEKGE
TLPTEARFDSNCITPGTEFMARLNEHLKYFVNMKISTDKSWQGITVYLSGHETPGEGEHK
IMEFIRSEKAKPHHDPNTRHCLYGLDADLIMLGLTSHEAHFALLREEVRFGGKKAQRVCA
PEETTFHLLHLSLMREYIDYEFSPVKDKISFEYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYRTYMAILPELGGYINENGHLNLERFEKYLTRLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGIAAEEARKNKQKKQKAQENSISLAALEKNEGEVTPKTTLEDEPED
DDLFETEFRQYKRTYYMTKMGVEVVSDAFLADQAECYVQAIQWILHYYYHGVQSWSWYYP
YHYAPYLSDIHNISEFKIKFELGKPFMPFEQLLAVLPAASKDLLPKCYQHLMTSQDSPII
EYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLQAMESCNKGLKEEEKRRNTHSACLMYW
YDKDAEFQYLSPWPEKFPAIERCHTRYKTIPLDAWHVEITHNKITKINKSALYFCGFPTL
KHIKHKFYLKKSGVQVFQQSSHGENMILEIIVDENSKDQMVENVASLILGKRVFVNWPHL
EEARVVAVSDGETKFYLEEPHGTQKLYMGNAVPPTKVAYVGDKEQSMWIKEVQGISEQYQ
RRKGIFIHETSVVVYAQLLTGNRYQLNQNGEVYLEKQWSKQVLPFVYQTVVKDIKAFDSR
FSNIRTLDDLFPPGSTAFMLGSPYYGCMGEVHDSHDVIPEGRIRVVFNIPCEPQLDTLIQ
NQHKYSVKYNPAYILASRLGVSGYLVSRFTGSIFIGRGSKKNPHGDHKANVGLNLKFNKK
NEEVPGYTKKVGNEWMYSSAVEQLLAEYLERVPELFNYVAKNSQEDICYEDDIWPGEDEN
GAEKVQEIVAWLKAHPVSALSRSSCDLQILDAAIVEKIEEEVEKCKQRKSNKKVRVTVKP
HLLYRPLEQQKGVVPDRDAEYRLFDRVVNVRENFSVPVGLRGTIIGIKGAARETDVLFEV
LFDEEFLGGLTIRCSPARGYRLPSSALINLSHGSRSEMGNQKLMAIVKPQPAVNNYNSYA
SDLSSVCSQKGHLGGLNHSPRSLFVPTQQLNGRQHYNLRAENQGNSNSPQKGSFLSGNQK
NKAQSKQDDEFCSIWQSLQSSGKSHHIQQNMHEKGAVLPQEIKLGTGHQFYKPGFNDGSF
KCQQRKQEPYKKFKEDSKVTRGESQPHNKMANQQNFAGVNKYNVKLLKRNESPNMPVIQK
AAVDGPCTGGKKDNELESLLASLKISKENEVQTYSKEARATNEEHLSPQSFAMKGTQMLK
EILKIDGSDLQTRNEVKSRINDVPAPSSRQDCHGAAVQYRPTKKMAAYMNKHSPGGPQNT
PAIETGGHPFVCPQPALSTVSELSRICSLLGMSQPDFSFLKTPQTMTVCHIKLSNGLLVH
GPQCHSEAEAKEKAALFALQHLSSVGVSFASPAPPPPPVFPNYQPLGVPVPPGSIPPVFA
QPPANMMPPSSHMFGPVSWGTPVPKHYYPGSYPGNVSLAGTIPVGSHNQFIPLQVTKKRA
ASKKNFELKEFQSSPQAAPLKNEQPMSSDHIQQDSSSASLKSPQAAQSTVSFQDNVATPS
VPHNKSTPNTSSKRKPRKLAVNFGAPKSSE
NT seq
5313 nt
NT seq
+upstream
nt +downstream
nt
atgggggtccccaagttctaccggtggatctcggagcggtacccctgcctcagccaggtg
ctgaaggagcatcagattccagaattcgacaacttatacctggacatgaatggcattata
catcagtgttcacatccaaatgatgatgatgtccacttcagaatctcagaagataagatt
tttgccaatatttttcactatttggaagtactgtttcgcattattaaaccaagaaaggtt
ttctttatggcagttgatggagtagctccaagagcaaaaatgaatcagcagcgtgggaga
cgttttagatcagcaaaagaggcagaagagaaaataaaaaaagcattggaaaagggagaa
actctccctacagaagccagattcgactccaactgtattacaccaggaactgaattcatg
gccagattgaatgagcatcttaaatattttgtaaatatgaagatttccacagacaaatct
tggcaaggaataacagtctacttatcagggcatgagactccaggggaaggtgagcacaaa
attatggagttcatcagatcagaaaaagcaaagccccatcatgatccaaacacaagacac
tgtctctatggcttagatgctgatttgataatgctgggattaacaagtcatgaggcacac
ttcgcgctcttaagagaagaagtcagattcggtggtaaaaaggctcaaagagtatgtgca
ccagaggaaaccacatttcatttactgcacttatcactgatgagagaatatattgattat
gaattttccccagtaaaagacaagatttcttttgaatatgatattgaaaggataatagat
gattggatcttaatgggtttcctcgtaggaaatgattttattcctcatctacctcattta
cacattaatcatgatgcactgccactactttatagaacatacatggctatcttgccagaa
ctgggaggttacatcaatgaaaatgggcatctgaatttagaacgttttgagaaatatctc
acaaggttgtcagattttgatcgtgaacacttcagtgaagtctttgttgacctaaaatgg
tttgaaagtaaagtgggcaataaatacctcaacgaggcagctgggattgcagcagaggaa
gccagaaaaaataaacaaaagaaacaaaaggctcaggaaaattctatatctttggctgct
ttagaaaaaaatgaaggtgaagtgacccctaaaaccactttggaagatgaaccagaagat
gatgatctgtttgaaactgagtttaggcaatacaaaagaacttactacatgacaaaaatg
ggtgtagaagtagtgtctgatgccttcttggctgatcaagctgaatgttatgtccaggca
atacagtggattttgcattattattaccatggagttcaatcatggagctggtattaccct
tatcattatgcaccttacctgtcagatattcacaacatcagtgaattcaaaatcaaattt
gaattgggaaaacctttcatgccatttgaacagcttcttgctgtacttccagcagctagc
aaagatctgctacctaaatgctaccagcatttgatgactagtcaagactctcctattata
gaatattatccacctgattttaaaactgacctaaatggtaaacagcaggaatgggaagct
gtagtactaatcccgtttattgatgagaagcgactgctgcaggccatggaatcctgtaat
aagggcctaaaagaagaggagaaacgaagaaacactcacagtgcttgcttaatgtactgg
tatgacaaagatgctgagttccagtacctctcaccatggcccgagaaattccctgcaata
gaacgatgtcacacgaggtataaaacaatacctttggatgcttggcatgtagagataacc
cacaataagataactaaaatcaacaagagtgcattatatttttgtggatttcctacttta
aagcacattaaacataagttctatcttaaaaaaagtggtgtacaagtgtttcagcaaagc
agccatggagagaacatgatattagaaatcatagttgatgagaactcaaaagaccagatg
gtagaaaatgttgccagtttgatacttggaaagagggtttttgttaactggccccacctt
gaagaagccagagttgttgcagtgtcagatggagaaactaagttttatttggaagaacca
catggcacacagaagctttacatgggaaatgcagtgcccccaactaaagtggcttatgtt
ggagataaggaacaaagcatgtggataaaagaagttcaaggcatttcagagcagtaccag
agaaggaaaggaatatttatccatgaaacatcagtagttgtatatgctcagttactcact
ggtaatagatatcaactaaaccaaaatggagaagtttatttggagaagcagtggtctaaa
caagttcttccttttgtgtaccaaacagttgtcaaggatatcaaagcctttgactctcgt
ttttcaaacatcagaactctggatgatttgtttcctcctggaagtacagccttcatgctg
ggatctccttactacggctgcatgggagaagttcacgattcacatgatgtgattccagaa
ggtagaatccgggtagtttttaatattccgtgtgaaccccagcttgatactttaatacag
aaccagcataaatattctgtgaaatacaatcctgcatatattttggccagccgtcttgga
gtaagtggatatcttgtctccagatttacagggagtatctttattggaagaggatcaaag
aagaatcctcatggtgatcacaaagcaaatgtggggctaaacctgaagttcaataagaaa
aatgaagaagttcctggctatactaagaaagttggaaacgaatggatgtattcttctgct
gtagaacaactacttgctgagtatttagaaagggtgcctgaactatttaattatgtagcc
aagaacagccaggaagatatctgctatgaagatgatatttggcctggagaggatgagaat
ggagctgagaaagtgcaagaaattgttgcctggctaaaggcacatcctgtgtctgctttg
tctcgctcatcttgtgacttgcaaattttggatgcggccattgttgagaaaattgaagaa
gaagtagagaaatgcaagcagagaaagagcaacaagaaggtgcgagtaactgtgaaaccc
catttgctgtacagaccattagaacagcagaagggggttgttccagatcgagatgcagag
tacaggctgtttgaccgtgttgtcaatgtcagagagaacttttctgttccagttggtcta
cgaggcaccattataggaattaaaggagctgctagagaaacagatgtcctctttgaagtt
ttgtttgatgaagaatttcttggaggcctcactataaggtgctcgcctgccagaggttat
cgcctgccctcaagtgccttaattaacctgtctcatggtagtcggtcagaaatgggaaat
caaaagctgatggccatagttaaacctcagccagcagtgaataactacaactcatatgca
tctgatctgtcatctgtatgctcacagaaagggcatctgggaggcctcaaccattctcct
cgctccctttttgttcctactcaacaactgaatggaagacagcattacaatctcagggct
gaaaatcagggcaactctaactcaccccagaaaggatcatttctgagtggcaatcagaaa
aataaagcacagagtaagcaagatgatgaattctgcagcatatggcagtcattgcagagt
tctgggaagtctcatcacattcaacaaaacatgcacgagaagggtgcagttctacctcag
gaaatcaagctgggaactggccatcagttttataagccaggcttcaatgacggcagcttt
aaatgtcagcaaagaaaacaggagccttataaaaaatttaaagaagattccaaagttaca
agaggtgaaagtcaaccgcataataaaatggcaaaccagcagaattttgcaggtgtgaat
aagtacaatgtcaaacttttgaagaggaatgaaagtcccaacatgcctgtaattcagaag
gctgcagttgatggtccctgcacaggtggaaagaaggacaatgaactggaaagtcttcta
gcttctttgaaaatttccaaagaaaatgaagtgcagacttactccaaggaagcgagagct
acaaatgaggaacatctgtcaccacagtcatttgctatgaaaggaacacagatgctcaaa
gagattttgaagatagatggctcagatctgcaaacaaggaatgaagtgaaatcacgaatt
aatgatgttcctgctccctctagtagacaggattgccatggagctgctgtgcaatacaga
ccaacaaaaaaaatggctgcttatatgaacaagcatagccctggaggcccccaaaacaca
ccagcaatagaaactggaggtcaccctttcgtttgtccacagcctgcactgtctactgtt
tctgaactttctcgtatttgttctcttcttggaatgtcacaaccagatttctctttcctg
aaaacaccacagaccatgacagtttgccacataaagctgtcaaatggtttattggttcac
ggaccacagtgtcattccgaagctgaagcgaaggagaaagccgcgctctttgctttacag
cacttgagttctgtaggagtaagctttgcttcacctgcacctccgcctccaccagtgttt
ccaaattatcaaccgctaggagttcctgtaccacctggatcaattcctccagtatttgca
cagcccccagctaatatgatgcctccatcatctcacatgtttggtccggtgtcctggggg
actccagtgcctaagcattattatcctggctcctatccaggaaatgtgtctcttgcagga
actataccagttggttctcacaatcagtttatacctctgcaggtaactaaaaaaagggct
gctagcaagaaaaactttgaactcaaggagtttcagagttcccctcaagctgcaccacta
aagaatgaacagccaatgtcttctgaccacattcagcaagatagttcttcagcctcttta
aaatctcctcaagctgctcaatccactgtttcatttcaagacaatgtggctactccaagt
gttcctcataacaaatcaacaccaaacacatccagcaagcgaaagccaagaaaactggct
gtcaattttggcgcaccaaaatcttcagaataa
DBGET
integrated database retrieval system
