Corvus cornix (hooded crow): 104694136
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Entry
104694136 CDS
T03546
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104694136 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccw03041
]
104694136 (SF3B1)
03036 Chromosome and associated proteins [BR:
ccw03036
]
104694136 (SF3B1)
Spliceosome [BR:
ccw03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104694136 (SF3B1)
Complex B
104694136 (SF3B1)
Complex C
U2 SnRNP specific factors
104694136 (SF3B1)
Chromosome and associated proteins [BR:
ccw03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104694136 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
HEAT_EZ
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
TALPID3
Motif
Other DBs
NCBI-GeneID:
104694136
NCBI-ProteinID:
XP_039410918
LinkDB
All DBs
Position
7:28723597..28747237
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatatcgaagcacaaattcgagaaattcaagga
aaaaagcctgctctcgatgaagcacaaggagtaggccttgattccacaggatattatgat
caagaaatttatggtggcagcgacagcagatttgctggatatgtcacttctattgcagca
accgaattggaagatgatgatgatgactacccttccacaagtttgctcggccagaagaag
ccagggtaccatgctccagtggcattgcttaatgacataccacagtctactgaacagtat
gatccttttgcagaacaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
actccagaccctaaaatgaatgccagaacatacatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagccgcttctcagccaccttcaaaacgcaaacggcgttgggatcag
acagctgatcagactcctggtgctacacctaaaaaattgtccagttgggatcaagcagag
actcctggacacaccccatctctgcgatgggatgaaactccaggccgtgcaaagggcagc
gaaactccaggtgccaccccaggttcaaaaatctgggatccgactcccagtcatacccca
gcaggagctgcaacacccggccgggacacgcccggtcacgcaacaccaggccacggaggc
gccacttccagtgcacggaaaaatcggtgggatgaaacacccaaaacagaaagagatact
ccgggccatggcagtggatgggctgagacacctcgtacagatagaggtggtgactccata
ggtgagacaccaaccccaggagcaagcaaaaggaaatcacgctgggatgaaacgcctgcg
agccagatgggtggcagcactcctgttctgacacctggcaaaacacccatcggtacacca
gctatgaacatggcaactcctacaccaggtcacatcatgagcatgactcctgaacagctg
caggcttggcgatgggagagggaaattgatgagagaaacagaccactttctgatgaggag
ttggatgctatgtttccagaaggatataaggttctcccacccccagctggttacgtgccc
atccgtactcctgctcggaagctcacagcaactccaacccccctggggggtatgacagga
ttccacatgcagacagaggaccgcactatgaagagtgttaatgaccagccatctggcaac
ctgccgttcctgaaaccagatgatatccagtactttgacaagctgctggttgatgttgat
gaatcaactctgagtcctgaggaacagaaggagagaaaaataatgaaattacttctgaaa
ataaagaatggcacacctcccatgcgaaaggctgccttgcggcaaattactgataaagct
cgggagttcggagcagggccgttgttcaatcagattctgcctctgctgatgtcaccaaca
ctcgaagatcaggagcgtcacttgcttgtcaaagtcatcgacagaattctgtacaaattg
gatgacttggtccgaccatacgtacacaagatccttgtcgtcattgaaccactgctgatt
gatgaagactactatgctagagtggaaggcagagaaattatttcaaacttggctaaggct
gctggtttggcaacaatgatctccacaatgcgacctgatattgataacatggatgaatat
gtcagaaatacaacagctcgagcctttgctgttgttgcttctgctctgggcattccttct
ctgttgcccttcttgaaagctgtctgtaaaagcaaaaagtcctggcaggccaggcacact
ggcatcaagattgtacagcagattgctattcttatgggttgtgctatcctgcctcatctc
cggagcttggttgaaattattgaacatgggctggtggatgagcagcagaaagttcgcacc
atcagtgctttggccattgctgctttggctgaggcagccactccctatggtatcgagtcc
tttgattctgtcctgaagcctttgtggaagggtatacgtcagcacagaggaaagggtttg
gctgcatttttgaaggctattggttacctgattccactcatggatgccgagtatgcaaac
tactacaccagagaagtcatgctaattcttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtgttgaaggtggtaaagcagtgctgtggtacggatggtgttgaagca
aactacattaaaacagaaatcttgccacctttcttcaaacatttctggcagcacagaatg
gcactggacagaagaaattacagacagttggttgatacaactgtggagctggcaaataaa
gttggagcagcagaaattatttctagaattgtggatgatctgaaagatgaggctgagcag
tacagaaaaatggtcatggaaacaattgagaagatcatgggaaatctgggggcagctgac
attgatcataaactggaagagcagctcattgatggtattttgtacgccttccaggaacag
acaacagaggattctgtgatgctgaatggttttggcacagtggttaatgctctaggcaaa
agagttaaaccctacttgccacagatctgtggtacagttttgtggcgtttgaacaacaaa
tcagccaaagtcaggcagcaggccgctgacctgatctctcgtactgcagttgtcatgaag
acctgtcaagaggaaaaactgatgggacacttgggtgttgttttgtatgagtacctgggt
gaagaatatcctgaagtactgggcagcatacttggagcgcttaaggctattgtgaatgtt
ataggtatgcacaagatgacgccaccaatcaaagacctgctgccacggctgacacctatt
ttgaagaacagacatgagaaagtacaggaaaattgtattgatcttgttgggcgtattgca
gacagaggtgcagagtatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gagttactaaaagctcacaagaaagctatcagaagagccacagtgaacacttttggttat
attgcaaaagctattggacctcacgatgtattggccaccctgctgaacaacttgaaagta
caggaaaggcagaacagagtatgtactacagtagcaattgctattgtggctgaaacatgc
tcacctttcacagtgctgcctgcactcatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtgttaaaatctctttctttcctgtttgaatacattggagagatgggaaaa
gactacatttatgctgttacaccattgcttgaagatgctttaatggacagggatcttgta
cacagacagacagccagtgctgtggtgcagcatatgtccctcggtgtttatgggttcggc
tgtgaagattcccttaatcacttgttaaattacgtgtggcctaatgtgtttgaaacctct
cctcatgtcatccaggcagttatgggggctctggagggcctcagagtcgctattgggccc
tgcaggatgttgcagtattgtttacagggtttgtttcaccctgccaggaaagtcagagat
gtttattggaagatctataattcaatctacattggatcacaggatgctctgatagcacat
tatccaagaatctataatgatgaaaagaacacctatattcgttatgaacttgattacatc
ttataa
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