Corvus cornix (hooded crow): 104694236
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Entry
104694236 CDS
T03546
Symbol
DDX5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104694236 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccw03041
]
104694236 (DDX5)
03009 Ribosome biogenesis [BR:
ccw03009
]
104694236 (DDX5)
Enzymes [BR:
ccw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104694236 (DDX5)
Spliceosome [BR:
ccw03041
]
Complex A
U1 snRNP components
U1 related factors
104694236 (DDX5)
Complex B
104694236 (DDX5)
Ribosome biogenesis [BR:
ccw03009
]
Eukaryotic type
Pre-60S particles
Helicases
104694236 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
104694236
NCBI-ProteinID:
XP_039418080
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All DBs
Position
18:complement(8494857..8502462)
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AA seq
604 aa
AA seq
DB search
MPGYSSDRDRGFGAPRFGGSRGGPLSGKKFGNPGEKLTKKKWNLDELPKFEKNFYQEHPD
VVRRTAQEVEQYRASKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQG
WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ
QVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTY
LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGA
LELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRD
GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED
YIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLLQLIEDRGSGRSR
GDRRDRYSAGKRGGFSSFRERENFERTYGALGKRDFGAKTQNGAYSAQSFSNGTPFGNGF
AAAGMQAGFRAGGNPAGAYQNGYEQQYGSNIANMHNGMNQQQYAYPATGAAPMIGYPMPT
SYSQ
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggtattccagcgacagggatagagggtttggagcccctcgttttggaggaagt
agaggtggacctctctctgggaagaaatttggaaaccctggggagaaacttacaaaaaaa
aaatggaacttagatgagctgcccaaatttgagaagaacttctaccaagaacatccggat
gtagttagacgtactgcgcaagaagttgaacagtacagagcaagcaaagaggtcacagtt
aggggccataactgtccaaaaccaattatcaacttttatgaagcaaacttccctgcaaat
gttatggaagtaattcagaggcagaacttcactgaaccaactgctattcaagcacaaggt
tggcctgttgcattgagtggattggatatggtcggagtggcacagactggatcagggaaa
acactctcttacttactgcctgccattgtgcatataaatcatcagccattcctggagcga
ggagatggacctatttgtcttgtgctggcaccaacccgtgaactggcccaacaagtgcag
caggtggccgctgaatacagcagagcgtgtcgtttgaagtccacatgtatttatggaggt
gctccaaagggaccacaaatccgtgacctggaaagaggtgtggaaatctgcattgcaaca
cctggaagacttatagacttcttagaagctggaaagaccaatctcaggaggtgtacttac
cttgtccttgatgaagctgacaggatgcttgacatgggatttgaacctcagatcagaaaa
attgtggatcagataagacctgacaggcagactctgatgtggagtgccacatggcctaag
gaagtgaggcagctggccgaagatttcttgaaagaatatgtgcacatcaacatcggtgca
ctggaactgagtgcaaaccacaacattcttcagattgtggatgtgtgtcatgatgtcgag
aaagatgacaagcttattcgtttgatggaagaaatcatgagtgagaaggaaaacaaaaca
attgtttttgtggaaaccaaaaggcgttgtgatgatcttaccagaaaaatgaggagagat
gggtggccagcgatgggtattcatggtgataaaagtcagcaggagcgggactgggttcta
aatgaattcaaacatggaaaagcaccaatcctgattgctacagatgttgcatccagaggt
ctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaactcctcagaggac
tatatccaccgaattggacgaactgcccgcagtaccaaaacaggcacagcatacacattc
tttactcctaacaatattaagcaagtaaatgacctcatctctgtgcttcgggaggctaat
caagccatcaaccccaaattgcttcagctgattgaagacagaggttcaggtcgttcccga
ggtgaccgacgtgacagatactctgcgggcaaaaggggtggatttagtagttttagagag
agggagaactttgagagaacctatggtgcgctaggcaagagagactttggagcaaaaacc
caaaatggggcttacagcgcccagagtttcagcaatggaactccctttgggaatggcttt
gcagctgcaggcatgcaggctggcttcagggccggtggtaaccccgcaggagcgtaccag
aacggctatgagcagcagtatggcagtaacattgccaacatgcacaatggcatgaaccag
cagcagtatgcctatcctgccactggtgctgctcctatgataggttaccccatgcccaca
agttattctcaataa
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