Corvus cornix (hooded crow): 104694483
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Entry
104694483 CDS
T03546
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04510
Focal adhesion
ccw04512
ECM-receptor interaction
ccw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104694483 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104694483 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104694483 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccw04147
]
104694483 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
ccw00536
]
104694483 (COL4A6)
Exosome [BR:
ccw04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104694483 (COL4A6)
Glycosaminoglycan binding proteins [BR:
ccw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104694483 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104694483
NCBI-ProteinID:
XP_039427918
LinkDB
All DBs
Position
4A:complement(12085704..12210111)
Genome browser
AA seq
1695 aa
AA seq
DB search
MGRAGALVLLLLWLGAELASAGGKKSYSGPCGGRDCSAGCKCFPEKGARGRPGPIGLPGP
IGAPGFTGPEGLPGAKGERGAVGPPGPAGQKGDKGPMGVPGFQGINGIPGHPGQSGPRGR
PGLDGCNGTSGSPGISGPDGFPGLPGLPGRPGLKGLKGEPVFAQGSLKGLKGENGLPGLD
GVPGPKGFPGPVGPAGPIGLPGFQGPVGPLGPPGPKGNMGLGFQGEKGEKGDVGLPGPPG
PPPSTGILEFMGFPKGKQGEKGEPGPQGFPGDQGLPGIPGFGGVGEKGEKGVPGLPGGRG
LLGLDGSDGIPGRKGHPGVPGYPGLDGVEGMKGELGDIGPPGPPVVIDREGVVISGAPGD
PGNPGIPGPPGDEGIIGLPGLPGAPGFPGLERDGMGPGGSPGIPGVKGDVGEPGRATIGL
PGPPGRGGLPGLPGAPGLPGSPRPSFSPGTILNGRTGAPGEPGQRGLPGALGPKGYKGEA
GDCACDGGVTRAGLKGISGPPGLSGSPGVPGAKGIGGDPGSVGAPGLRGPPASAGQQGLP
GLKGEKGDPSYATVKGARGDRGATAPRGPSGIPGTPGRDGLPGLPGPPGPPGDGGLGFPG
EKGLPGLPGTKGHRGETGSPGVGYPGPSGIRGPPGDPGMDGFPGQAGLPGPPGITLPCIV
PGAYGPPGTPGFPGLPGPKGSKGFSGIPGQPGLHGSKGQPGSPGIIGLQGEPGFPGPRGE
QGSQGLPGLEGTDGLPGKMGASGLAGIKGAPGDVFGAESGTVGEHGRPGLPGDKGLTGDI
GFPGPKGLDGRLGLLGIKGEQGHPGYSGVPGLRGPPGPGGPFGIKGKPGPLGPAGLAGAP
GCQGLPGVKGVAGDVGPQGPAGMKGFPGLDGAPGSPGERGFLGPPGPYGQDGHPGFSGPK
GEKGSSGLLGFPGMPGLPGVPGVNGFKGAPGTAGGKGSPGVVGLQGQKGDRGDIGPPGPP
VLGTSEQALQIKGDKGDPGLAGLAGFPGPRGDKGIPGSRGQPGLPGPVGSASKERGLHGD
PGFPGPPGQPGLPGQKGAHGIMGFPGMPGERGSDGTIGILGFPGPIGLPGPKGDQGESVG
VPGIAGPKGERGDPGFPGERGREGLKGEPGYPGNTGVNGPKGSPGDLGQEGPAGIPGNAG
LRGSPGPPGPPGQPGSVGFPGARGTVGPKGFHGFPGLNGLNGLPGTKGSPGTPGLSEAGL
KGPAGLPGPKGEEGSPGLGRGAAGFPGPKGSSGDMGPPGPMGLPGLPGTPGVSLPSDIRG
RPGDAGVPGTDGSSGFPGPPGPRGPPGPASDQGDTGTPGFPGVLGLRGIKGDVGPTGPVG
LPGASGFKGARGEPGLMGMPGKDGPPGDPGYAGLKGEMGRRGLPGRPGAPGITPQPEEVT
APAGLPGLPGIDGVPGFDGDPGFHGPAGKPGPKGLPGRLGLKGRDGLPGTPGIVGEPGLP
GAPGPQGFEGAAGKPGSLGLPGMPGRSVGVGYTLVKHSQSDQIPPCPIGMNKLWDGYSLL
YVEGQEKSHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMMPV
DSVQIPQYISRCSVCEAPSQAVAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQ
SLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVEQEQQFVSAPPSETLKAGQ
LRTRVSRCQVCMKNL
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcgcaggggcgctggtgctgctgctcctctggctgggcgcggagctggcgagt
gcgggtggaaagaagtcctacagtgggccatgtgggggccgcgattgcagcgcaggatgc
aaatgttttccggagaagggtgcacggggtcgaccaggaccgattgggcttccaggacca
ataggagcacctggatttactgggccagaaggtttgcctggagcaaaaggtgagagagga
gcagtgggccctcctggaccagctggacagaaaggtgacaagggtccaatgggagttccc
ggatttcagggcatcaacgggatcccaggtcatcctgggcagtctggacctagaggccgg
cctggcctcgatggctgcaatggtacctctgggagtcctggcatttctggaccagatggg
tttcctggcctacctggactgcctggtcgtcctggcctaaaaggccttaaaggagaacct
gtttttgctcaaggcagtcttaaaggattaaagggtgaaaatggtcttcctggattggat
ggagttcctggccccaaaggttttccaggtccagtaggtcctgcaggccctataggatta
ccaggttttcagggtccagtgggtccccttgggccaccgggtccaaaaggtaacatggga
ttaggctttcaaggagagaaaggagaaaagggagatgtagggctgcctgggcctccaggt
cccccaccatccactggaatactggaattcatgggatttccaaaggggaagcaaggagaa
aagggtgagccaggtcctcaaggattccctggagatcaaggattgcctggcatcccgggc
tttggaggtgttggagaaaaaggagaaaaaggtgtgcctggcttaccaggtggcaggggt
cttttgggactggatggatctgatggaattccagggagaaagggccatccaggtgttcca
ggctatccaggactggatggagtcgaaggcatgaagggtgaattaggtgacatcggtccc
ccaggccctcctgttgttattgacagggaaggggtagtcatttcaggtgccccgggtgac
cctggaaacccgggaatacctggtcctccaggagatgaagggatcattggtttaccaggc
cttccaggagctccagggtttccaggcctggagagagatggaatgggccctggagggtct
ccaggtattccaggagtgaagggtgatgtgggagaaccaggaagagcaacaattggatta
ccaggccctcccggcagaggtggtttaccaggtctgccaggagcaccaggattgcctggt
tcaccacgcccttcattctccccagggacaatcctgaatggaaggactggggccccgggg
gagcctgggcaaagagggctgccaggagctttgggtccaaagggctacaaaggagaggca
ggtgattgtgcttgtgatggaggagttacaagagctggtctaaaaggcatctcaggtcca
ccaggtctgtcgggaagccctggtgtgcctggtgccaagggcattggtggagacccaggc
tctgtgggagcaccaggactgcgaggccctccggcttcagctggtcagcaaggacttcca
ggccttaagggagaaaaaggggatccatcctatgcaacagtcaaaggtgctcgtggggac
cgcggtgcaacagcgcccagaggaccttcaggcatcccgggaactccgggcagggatgga
cttccagggttgccaggcccaccaggccctccaggtgatggtggactgggtttcccaggt
gaaaaagggctgccaggattacctggcaccaagggccatcgtggagaaactggttctcct
ggtgttggatacccaggtcctagtggaattcgtggaccaccaggtgaccctggaatggat
gggtttccaggacaagcaggtcttccaggccctccaggtatcaccttgccctgcatagtt
cctggagcatatgggcccccggggactcccggctttccaggactgccaggtcccaaaggc
agcaaaggcttttctggcattccaggccaacctgggttacatgggtctaaaggacagcca
gggtctccaggaataataggcttgcaaggggaacctggcttccctggacctcgaggagag
caaggctcacaaggacttccaggactggagggaacagatggtttgcctgggaaaatgggt
gcttcaggcttagctggaataaaaggagctcctggagatgtatttggtgccgagagtgga
accgtgggggagcatggccgacctggacttccaggtgataaagggcttacaggtgatatt
ggatttccagggccaaaagggctggatggaagactaggcctcctgggtattaaaggtgaa
cagggtcatccaggatattcaggtgtccctggactgcggggacctcctggccctggaggt
ccttttggcattaagggaaaaccaggacccttggggccagctggccttgcaggagcacca
ggctgtcaaggacttcctggagtcaaaggtgtggctggggatgtaggaccacaaggccct
gctggtatgaaaggcttcccaggtcttgatggtgctccaggatctcctggggaaagagga
ttcttagggccacctgggccttatggtcaagacggacatccaggtttctctgggccaaaa
ggcgagaaaggctcttctggcctgcttggtttccctggcatgccaggactgcctggtgtc
cctggagtgaatgggtttaaaggagctcctggcacagctggaggaaaaggaagtccagga
gttgtgggacttcaaggtcaaaaaggtgacagaggtgatataggtcccccaggtcctcct
gttcttgggacttcagaacaggcactgcaaatcaaaggagacaaaggagatcctggatta
gctggacttgcaggattccctggacctagaggtgataaaggaatcccgggaagccgtggg
cagcctggtctccctggtccagttgggtcagcaagcaaagagagaggtcttcatggtgac
ccaggcttccctggtccacctggacaacctgggctgccaggacagaagggtgcacatggt
atcatgggatttccaggaatgccaggagagaggggttcagatggcaccataggaatactt
ggattcccaggacctattggccttcctggtccaaagggtgaccagggagagtctgttggt
gttcctggcattgctggaccaaaaggagagagaggagacccagggtttccaggagagaga
ggtagagaaggtctcaagggtgaaccgggctatccaggaaacacaggggtgaatggaccc
aaaggcagcccaggagatcttggccaagaaggaccagcaggaattcctggaaatgctggg
ctgagaggatcccctggcccaccaggacccccaggacagccaggatctgttggattccct
ggagctcgtggaacagtgggacctaaaggctttcatggatttccaggtttaaatggtctg
aatggcttgccaggcacaaaagggtctcctggaacaccaggtctgagtgaagctggactg
aaaggacctgcaggtctcccaggtccaaagggtgaagaaggctctccaggcttgggaaga
ggagctgcaggattccctggaccaaaaggctcatcaggagacatgggtccccctggtcct
atgggactgcctggcttgccaggaacacctggagtttctcttccatccgacatacgtggg
agacctggagatgctggcgttccaggcaccgatgggagttcaggttttccaggtcctcca
ggaccacgaggaccccctggcccggcttctgaccaaggtgacacaggcactcccggtttc
cctggtgttcttggcttgcgaggcattaagggtgacgtgggacccactggtccagttgga
ctccctggagcatctggattcaaaggggcaagaggcgagcctggcctaatggggatgcca
ggtaaagatgggcctccaggggatcctggttatgctgggctgaaaggtgaaatgggccgt
cgaggtctccctggcagaccaggggctccaggaataaccccacagccagaagaagtcaca
gcccctgcaggattacctggtctgccaggaattgatggtgtccctggctttgatggagat
cctggattccatggcccagctggaaaaccaggcccaaaaggtttgccaggaagactgggt
ttgaaaggacgtgatggcttacctggaacacctggcatagttggggaaccaggacttcca
ggtgccccaggaccacagggatttgaaggtgctgctgggaagccgggttcccttggtttg
ccgggaatgcctggtcggagcgtgggcgttggatacactctggtgaagcacagtcagtca
gatcagatccccccatgccccatagggatgaacaagctctgggacggctacagcttgctg
tacgtggaggggcaggagaagtcacacaaccaggatctcggttttgctggctcatgtttg
cctcgcttcagcaccatgccctttatttactgcaacatcaatgaagtgtgctactacgcc
agccgaaatgacaagtcctactggctgtccaccactgctcccatccccatgatgcccgtg
gacagcgtccagatcccacagtacatcagccggtgctctgtgtgtgaagcaccttcccag
gctgtggctgtgcacagccaggacatcaccatcccacagtgtcccctgggctggcgcagc
ctgtggataggatactccttccttatgcacactgcagcgggggcggaaggtggaggccag
tcccttgtctcacccggttcctgcctggaggatttccgagctactccgttcatcgagtgc
aacggtgctcggggcacgtgccattactttgccaacaagtacagcttctggctgaccacg
gtggagcaggagcagcagtttgtcagtgctcctccctcagagactctgaaagcgggacag
cttcggacacgggtcagccgctgccaggtgtgcatgaagaacttgtag
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integrated database retrieval system
