Corvus cornix (hooded crow): 104694606
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Entry
104694606 CDS
T03546
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccw04147
]
104694606 (COL18A1)
00535 Proteoglycans [BR:
ccw00535
]
104694606 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
ccw00536
]
104694606 (COL18A1)
Exosome [BR:
ccw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104694606 (COL18A1)
Proteoglycans [BR:
ccw00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
104694606 (COL18A1)
Glycosaminoglycan binding proteins [BR:
ccw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104694606 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
104694606
NCBI-ProteinID:
XP_039411322
LinkDB
All DBs
Position
7:39024256..39043685
Genome browser
AA seq
1440 aa
AA seq
DB search
MPVAGRCQPVPTHLPFCSVLGTSHVRLPNYLRHSSEEEIRAALHEWEGLLESRCHRYLEW
FLCLLLLPGCSPSVPVTPPPCQGFCEAVRDLCWTHLAGGRLPLPCDALPEEDEGFSCVFI
NASAESLNAEVSLLELIGDPPTEEIHRIYGPDNNPGYVFGPNANTGQVARYHLPSPFYRD
FSLLFHIQPTTPRAGVLFAVTDSSQSIIYVGVKLSELRAGQQQIIFYYTEPGSPSSYPAA
TFTVPTLLNQWTRFAISVEEEEVVLYLDCEEHERVHFERSPDEMELEEGSGLFVAQAGGA
DPDKYQGVIADLKLRGDPRAAERQCEEEEDDAEVSGDFGSGMERGQQPLGKVEGVPGLVD
AVPVTSPPVAGASGPRSGGGSLQQAERTGAEETLRVSTGGTGRKGEKGEKGERGLKGDSG
TGGIVGPGSVKGQKGEKGDLGVKGSAGFGYPGSKGQKGEPGDPGPPGTHSQHADGSVVEQ
VTGPPGPPGKDGAPGRDGEPGDPGEDGKPGEMGPAGFPGMPGEPGQKGEKGDPGVGPRGP
PGPPGPPGPPGPSSKSDKLTFIDMEGSGFGGDLESLRGPRGPPGPPGPPGVPGLPGEPGR
FGMNRTDLPGPPGLPGRDGNPGTPGPAGPQGPPGRDGEAGQPGPKGERGDVGDLGLPGLP
GPKGNKGEMGPAGPPGEMGLAGLPGPIGPRGQPGPPGPPGPPGPGYEAGFGDMEGSGLSF
APGPPGPEGPQGVPGLPGMKGEVGSPGQPGLPGPKGDAGMPGVDGRPGLEGFPGPQGPKG
DKGSTGEKGERGQDGVGLPGPPGPPGPPGQVITVSSEDKSLVAVPGPVGRPGHAGFPGPV
GPKGDQGSAGPQGAPGLKGEKGEPGVTISPDGTVVTAKVKGEKGEPGLRGPMGPSGPPGR
AGMKGEIGFPGRPGRPGMNGLKGEKGDPADVLGLQGPPGPPGPPGPPGPPGSIVYSNGNT
FSDSGHPAFPGFHQFPGQKGEKGDTGPPGPPGHFPYDPSHFGASLRGDKGDAGPKGEKGE
PGSTPLYGPGVSGLPGPPGPQGYPGLPGPKGDSIVGPPGPPGPQGPPGIGYEGRQGPPGP
PGPPGPPGPPSFPGPHRQAVSIPGPPGPPGPPGPPGSSGMSLGLRAVPTYQAMLSAALEL
PEGSLVFLTDRQELYVRLRGGFRRVLLEEHNVIPSSALDNEVYDKPPTLHYAGPQPRGPL
HPLRNHVPPATARPWRGDEVVANQHRLPEQPLLHHQHELINGYYIHRRPDPAPVAAHVHQ
DFQPALHLVALNTPLSGGMRGIRGADFQCFQQARQVGLAGTFRAFLSSRLQDLYSIVRRA
DRAAVPIVNLRDEVLFNNWEALFTGSGAPLRAGARILSFDGRDVLRDAGWPQKSVWHGSD
TKGRRLPESYCETWRTEERAVTGQASSLAAGKLLEQAASSCQHAFIVLCIENSFMTAAKK
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atgccagtggccggccgctgccagcccgtcccgacccacctgcccttctgcagcgtgctg
ggcaccagccatgtccgattgccaaattacctccgtcacagcagcgaggaggaaattcgg
gcggctttgcatgagtgggaggggctgcttgagtcgcggtgccatcgctacctggagtgg
ttcctctgcttgctgctgctccccggctgtagcccctcggtccccgtaacccccccgcca
tgccagggcttctgcgaggccgtcagagacctgtgttggactcacttggcgggcgggcgc
ctgcctctgccttgcgatgctctccctgaggaggatgaagggttttcttgtgtctttatt
aatgcttctgcagagagcctgaatgccgaggtcagcctgctggagctgatcggggacccg
ccgacggaggagatccacagaatttacggccccgacaacaaccctggctacgtcttcggt
cccaatgccaacacgggccaggtggcccggtaccacctgccgagccctttctaccgggac
ttctcgctgctgttccacatccagcccaccacgccccgggccggcgtgctctttgccgtc
acggactcctcgcagagcatcatctacgtgggcgtcaagctctcggagctgcgggcgggc
cagcagcagatcatcttctactacacggagccgggctcgcccagctcctacccggccgcc
accttcaccgtgcccaccctgctcaaccagtggacgcgcttcgccatcagcgtggaggag
gaggaggtcgtcctgtacctggactgcgaggagcacgagcgcgtccacttcgagcgctcc
ccggatgagatggagctggaagagggctccgggctctttgtcgctcaggctggaggggct
gacccggataaataccagggggtgattgcggatttgaagctccgaggggacccacgggca
gccgagcgccagtgcgaggaagaggaggatgacgcggaggtctctggggattttggcagc
gggatggaacgtggacagcaacccttgggcaaggtggagggtgtcccagggctggtggac
gctgtccccgtcacctccccccccgtcgcgggggccagcggcccgaggagtggcgggggg
tccctgcagcaggccgagaggaccggggcggaggagacgctgcgggtctccacgggaggc
accggccggaaaggcgaaaagggggagaagggtgaacgcggcttgaagggggactcaggg
accggtggcatcgtggggccaggcagtgtcaagggtcaaaagggggagaagggagacctg
ggcgtcaagggcagtgctggatttggctaccctggctccaagggacaaaaaggagagcca
ggtgaccctggaccacctgggacccactctcagcatgctgacggctcggtggtggagcag
gtcaccggcccccctgggccaccagggaaggatggagcccctggcagggacggcgagcct
ggagatcctggcgaggacggcaaacccggtgaaatggggcccgcagggttccccgggatg
ccgggggagccgggccagaagggggagaagggtgacccaggcgtggggccgaggggaccc
cctggaccgcccggccctccgggaccaccaggaccctcctccaagagtgacaagctgacc
ttcatcgacatggagggctctggcttcggcggtgacctggagagcctgcggggtccacga
gggccacctggtcccccagggccgcctggcgtgcccggtttgccaggggagccaggacgg
tttgggatgaaccgcacggacctgccgggaccaccggggctgccgggcagggatgggaac
cccgggaccccggggccagcgggtcctcagggtcctccaggaagagacggggaggccggg
cagccggggcccaaaggagagcggggcgacgtgggtgacctcggcctccctggcctgcct
ggacccaagggcaacaaaggggagatgggaccagcaggacccccaggagaaatgggctta
gctggccttcccgggcccatcggaccccgagggcagcctgggccccccggccccccgggc
ccaccggggccaggctacgaggctggatttggtgacatggagggctcagggctgtcattc
gccccgggaccacctggacctgaaggaccacagggtgtgccaggactgccggggatgaag
ggagaggtcggcagccccggacagcccggcttgccaggaccaaagggagatgccggcatg
cctggcgtggacggccgccctggcctggagggcttccctgggccacagggacccaaaggt
gacaaaggcagcaccggtgagaagggagagcgaggccaagatggtgtggggctgcccggc
ccccccggcccacctggtccccctggacaggtcatcactgtgtccagtgaagataaatcc
ttggtggctgttcctggtccagtgggcagaccaggccacgctggcttcccgggtccggtg
ggaccaaaaggagaccaggggtcagctggtccccagggcgccccggggttgaagggggag
aagggggagcccggcgtcaccatcagccctgacgggaccgtggtcaccgccaaggtgaaa
ggagagaagggggagccggggctgcggggcccgatgggaccatcgggtcccccgggacga
gcagggatgaagggagagatcggctttccgggcagacccggacgtcccggcatgaacggg
ctgaagggcgagaagggcgaccccgcggatgtgctgggcttgcagggtcccccaggcccc
ccaggaccccctgggccccctgggccacctggcagcatagtctacagcaatggcaatacc
ttcagcgactccggccacccggcgttccccggtttccaccagttcccaggacaaaaggga
gagaaaggtgacaccggacccccaggacctccaggccactttccctatgacccgagtcac
ttcggtgccagcctgcggggtgacaagggggatgcaggtcccaagggtgagaagggcgag
ccgggcagcaccccactctatggtcctggagtctctggactgccagggcctccagggccc
cagggataccccgggctgccgggtcccaagggggacagtatcgttgggccaccggggcct
ccaggacctcagggtccccctggtatcggatacgaggggcggcagggccctcctggcccc
cctggcccccctggtccgcccgggccaccctccttcccaggtccccacagacaagctgtc
agcatccctgggcccccgggaccaccaggaccccccggacctccaggcagcagcgggatg
tccttggggctccgggccgtgcccacgtaccaggcgatgctgagcgccgcgctcgagctg
cctgagggcagcctcgtcttcctgaccgaccggcaggagctctacgtccgcctgcgcggg
ggcttccgcagggtgctgctggaggagcacaacgtgatccccagctcggctctggacaat
gaggtgtacgacaagccgcccaccctccactacgctggcccccagccccgcgggcccctg
caccccctccgcaaccacgtccctccggccaccgcccgtccctggcgtggggacgaggtg
gtggctaaccaacaccgcctgcccgagcagcccctgctccaccaccagcacgagctcatc
aatggttactacatccaccgccggccagatcccgcccccgtggccgcccacgtgcaccag
gacttccagcccgcccttcacctggtggccctgaacaccccgctgagcggcggcatgcgc
ggcatccggggcgccgatttccagtgcttccagcaggcccggcaggtggggctggccggc
accttccgcgccttcctctcctcgcgcctgcaggatctctacagcatcgtgcgcagggcc
gaccgcgccgccgtccccatcgtcaacctccgggatgaagtgctcttcaataactgggaa
gcccttttcacgggcagcggggctccgctgcgagccggcgcccgcatcctctccttcgat
ggccgggatgtcctgcgggatgcgggatggccgcagaagagcgtctggcatggctcggat
acgaagggccggcgcttgcccgagagctactgcgagacgtggcggactgaggagcgtgcc
gtcaccggccaggcttcctccctggccgctggaaaactgctggagcaggcggccagcagc
tgccagcacgccttcattgtcctctgcatcgagaacagcttcatgaccgccgccaaaaag
tga
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