Corvus cornix (hooded crow): 104694917
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Entry
104694917 CDS
T03546
Symbol
POLB
Name
(RefSeq) DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
104694917 (POLB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccw03400
]
104694917 (POLB)
Enzymes [BR:
ccw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
104694917 (POLB)
DNA repair and recombination proteins [BR:
ccw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
104694917 (POLB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
104694917 (POLB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
HHH_8
DNA_pol_B_thumb
HHH_5
HHH_3
NTP_transf_2
HHH_2
IMS_HHH_1
Cdd1
DUF6932
Motif
Other DBs
NCBI-GeneID:
104694917
NCBI-ProteinID:
XP_039420222
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All DBs
Position
22:79420..88648
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AA seq
335 aa
AA seq
DB search
MSKRKAPQESPNEGITDFLTELANYERNVNRAIHKYNAYRKAASVISRYPSKIRSGAEAK
KLDGVGAKIAEKIDEFLSTGKLRKLEKIRQDDTSASINLLTRVTGIGPAAARKFVEEGIK
TLEDLRKIEHKLTHHQRIGLKYFEDFEKRIPREEMLQMQEIVLKEIKKLDPNYIATVCGS
FRRGAESSGDMDVLLTHPSFTSESSKQSKLLRHVVEQLEKVHFVTDMLSKGDTKFMGVCQ
LPDKEDGTAYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEMGFTINEYTIRR
LGVTGVAGEALPVECEKDIFDYIQWKYREPKDRSE
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagcgcaaagctccccaggagagccccaacgagggcatcaccgacttcctcacc
gaactggccaactacgagcgcaacgtgaaccgggccatccacaagtacaacgcgtacagg
aaagcggcctcggtcatatctcggtatccgagcaagatacggagcggggctgaagccaag
aagctggatggagtaggtgctaaaatagctgagaagatagacgagttcttatccactgga
aaactacgcaaattggaaaagattcgacaagatgatacaagtgcttctatcaacctcctg
acgcgagtcactggcattggtcctgctgccgctaggaagtttgtcgaggaaggaattaag
actctagaagatctaagaaaaattgagcacaagctgacccatcaccagcgaattgggttg
aagtattttgaagatttcgagaaaagaatcccaagggaagaaatgctgcaaatgcaggaa
attgtgctgaaggagataaagaagctggacccaaactatattgctacagtctgtggcagt
tttaggcgaggtgcagagtcaagtggtgatatggatgttctcctaacccatcccagcttc
acatctgaatcatccaaacagtcgaaactcctgcgtcatgttgtagaacaactagaaaaa
gtccactttgtcacagatatgctttctaaaggtgacacaaaattcatgggtgtctgtcag
ctgccagataaagaagatggaacagcctatccacataggagaatcgacatccggcttatc
ccgaaagatcagtattactgtggtgtactgtatttcacaggaagtgatatattcaataag
aacatgagaactcatgctctggaaatgggcttcacaatcaatgaatataccatacgtcgt
ttgggtgttactggagttgctggagaggccctgccagtagaatgcgaaaaagacatcttt
gactatatccagtggaagtaccgagagccaaaggatcggagtgaataa
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