Corvus cornix (hooded crow): 104695036
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Entry
104695036 CDS
T03546
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03030
DNA replication
ccw03410
Base excision repair
ccw03420
Nucleotide excision repair
ccw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104695036 (RFC5)
03410 Base excision repair
104695036 (RFC5)
03420 Nucleotide excision repair
104695036 (RFC5)
03430 Mismatch repair
104695036 (RFC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccw03032
]
104695036 (RFC5)
03036 Chromosome and associated proteins [BR:
ccw03036
]
104695036 (RFC5)
03400 DNA repair and recombination proteins [BR:
ccw03400
]
104695036 (RFC5)
DNA replication proteins [BR:
ccw03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
104695036 (RFC5)
DNA Replication Termination Factors
ELG1-RFC complex
104695036 (RFC5)
Chromosome and associated proteins [BR:
ccw03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
104695036 (RFC5)
DNA repair and recombination proteins [BR:
ccw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
104695036 (RFC5)
Check point factors
HRAD17(Rad24)-RFC complex
104695036 (RFC5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_22
AAA_16
AAA_24
AAA_11
AAA_lid_RFC1
AAA_assoc_2
nSTAND_NTPase5
DEAD
AAA_14
ResIII
DUF815
RuvB_N
AAA_5
AAA_30
AAA_19
DNAX_ATPase_lid
PhoH
TniB
AAA_7
TIP49
ATPase_2
nSTAND3
AAA_25
Hydantoinase_B
Thioredoxin_6
IstB_IS21
bpMoxR
Gp44_lid
AAA_28
Motif
Other DBs
NCBI-GeneID:
104695036
NCBI-ProteinID:
XP_039416977
LinkDB
All DBs
Position
15:complement(12484000..12486552)
Genome browser
AA seq
357 aa
AA seq
DB search
MAPAGSANLPWVEKYRPQALSELVSHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTIL
ACARQLYREREFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMT
QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQ
EEGVDVTEDGMKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANIL
DWMLNQDFSTAYRQIMELKTLKGLALQDILTEIHLFVHRGGHRVRLPMILERPNFPLALT
ERFLLSTVDFPPSIRIQLLIKLADIEYRLAAGTSEKIQLSSLIAAFQVTRDLVVAEA
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atggcgccggcgggcagcgcgaacctgccgtgggtggagaaataccgtccgcaggcgcta
tccgagctggtgtctcaccgggacatcctcagcaccgtgcagcgcttcatcagcgaggat
cggctcccgcatttgctcctctatgggccgcccggcaccgggaagacatccaccatcctg
gcctgtgccaggcagctgtaccgggagcgggaattcggctccatggtgctggagctcaac
gcctccgatgaccgcggcatcgacatcgtccgagggcccatcctgagcttcgccagcacc
aggaccatctttaagaaaggcttcaagctcgtcatcctggatgaagccgacgccatgacc
caggatgctcagaatgccctgaggagagtgatcgagaagttcacagaaaacacccggttt
tgcctcatctgcaactacctctccaagatcattcccgccctgcaatcccgctgcacccgc
ttccgcttcggccccctgaccccggagctgatggtgccgcggctccagcacgtcatccag
gaggagggggtggatgtgactgaggacgggatgaaggctctggtgaccctctcgagcggg
gacatgcgcagggccctcaatatcttgcagagcacctccatggcctttgggaaggtgaca
gaggagaacgtttacacctgcacggggcatcccctcaagtctgacatcgccaacatcctc
gactggatgctgaaccaggatttttccactgcctaccgccaaatcatggagctgaagacg
ctgaagggcctggccctgcaggacatcctcaccgagatccatctcttcgtgcacagaggt
gggcacagggtccggctcccgatgatcctggagaggccaaacttccccctggccctcacc
gagcgtttccttctctccacagtcgacttcccaccctccatccgcatccagctgctgatc
aagctggcagacatcgagtaccgcttggctgctggcaccagcgagaagatccagctgagc
tccctcatcgccgccttccaggtcaccagggacctggtggtggccgaagcctga
DBGET
integrated database retrieval system
