Corvus cornix (hooded crow): 104695459
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Entry
104695459 CDS
T03546
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccw03009
]
104695459 (PDCD11)
Ribosome biogenesis [BR:
ccw03009
]
Eukaryotic type
90S particles
Other 90S particles
104695459 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_Syf1_CNRKL1_N
OB_RRP5_4th
HAT_PRP39_N
Suf
HAT_PRP39_C
OB_RRP5
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
ARM_TT21_5th
TPR_CcmH_CycH
ARM_TT21
TPR_16
TPR_12
Motif
Other DBs
NCBI-GeneID:
104695459
NCBI-ProteinID:
XP_010407659
LinkDB
All DBs
Position
6:complement(12381490..12406074)
Genome browser
AA seq
1829 aa
AA seq
DB search
MASMEENFPRGGIQKKPAEGKTPKPKLERDNLFDVQHEEKPQKRKRSQKDQGTQKKFKAD
KTAAAEDNIMNIGPLTIEVLSEGMLLLGCIKEVSDYELAISLPNGLSGFVPVTQISDAYS
KLLTKQVAQGELLEELNSLPDMYSPGTLVRCIVTSIEKSADGRRSVKLSIDPKKVNKGLS
STALAAGMLLSGSVLSVEDHGYLIDIGVTGTHAFLPHQKAKNYIKAVKKGPDLKIGQNLN
CLIVEVKNEGRVVCLSIDRSEVAASVASERQNWALSNLLPGLVVKARVQKVAPLGMKLTF
LSYFTGIVDFMHMDPEKSMSYSPDQVVKACVLSVHPTSRAVRLTLRPPFLHPGGAPRQLP
GQRMGAVLEEAMVKAFYKQFGAVFELDDGTLAFARLKHLSKTRKSFKPGAFKEGCKHKCR
IIDYSLMDEMCVVSLKHQIIEARFLQYQDIHTGDVVQGKVLSLKPIGMQVKVADGIRGLV
PSLHLSDVILKQPEKKYNIGDEVKCRVLECSPGGKKLILTLKKSLVQSKLPVLSSYEDAK
PGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELGSDPISCPDKVFYEGQVLKVMVLKCE
PQQERLLLSFRLSSKPGPEDKWKCTPKEKQEVKYQTGEIVDVKILKKKDNGLEVSILEDE
DNVVAWIPTLHLSDFVATSKLLWHCLQEGDVLPRVMYLSVKGEHIILSRKSAVISAVQEE
QVVRSFSEIQPDMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQ
TVIAKVMSTDEEKQRVLLNLKVSECSSGDSAAESFALLNQYFKELKEIRDLLRRGDPSIC
ELVPGKGVHLVVQDVREDGSALFSGSSVTGLTVTATRYHLGDKNIAPGEKRKAIVLHVDA
LTSEVYVSLREELLKQRPKRRLRENSQHSAVVQHITEHFAIVSLLETGQLAAVPIACHFN
DTFRFDSEKLGVGQTISITLKAVKENDHGVLPAVQGPAKKNVFVRVRNESETALEEVLPA
VKHSLSPGDVVTGTVKSVKPTHVTVAIDDKLTGSIHASRILDEVPLGSFPTSTLKAGQKV
TARVIGGRDVNTHRYLPITHPHFTQSIPELSIRPSEKEGEFTAMLNLKEDSSLKKLGLYN
VGQTVTCFVKKYNVLKNWLEVEVGPDIRGRVPHLLLSLNTKVLKHPEKSFKNGQAISATV
TGTDATETNLCLSLTGIQSLEQDTISVGMITKVTPHIGLTIALPGGKTGKVSIFHLSDTY
TEDPLGKFKVGKIVRCYILSNENGKIQLSLRQSRLNPKVNSKVEDIEIVSIKDVKKGQLV
RGYVKSVTPSGVFFGLSTSLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLGVNRR
EKHIELSLLPEDTGMPSVLPESLGLPQYGAEEEKKEPDDEQREEPKLKTKRRRGNSESGQ
EAKPKKRKICPAEENDSGIEVYYREEDDQEEEATEKKSKVRKPGEAPRLQVSMGFTWDED
NAVDIPVLDQKEESSESEEEEDMQSKLKKQTKKEKELEKQKKEKELCRVEAALMDPSRQP
QSADDFDRLVLGSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWV
ALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYATSEKYKQAEELYHTMLKRFR
QDKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHLDVISRFAQLEFHSGDTEHAKA
LFESTLSSYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLSLAPKKMKFFFKRYLDYE
KKFGTAESVLGVKRAALEYVETKSSLAET
NT seq
5490 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatggaagaaaactttcctcgagggggcatccagaaaaaacctgcagaggga
aaaacacccaagccaaagttagagcgggacaatttgtttgatgttcaacatgaagaaaaa
cctcagaaaagaaaaaggagccagaaggatcaaggaacgcagaaaaagttcaaggcagac
aaaacagctgctgctgaagacaatattatgaatattggaccactcacaattgaggtgctc
agtgaggggatgctgctccttggctgtataaaagaggtcagtgactatgagctcgccatc
agtttgcccaacggcctctccggatttgtgccggtcacgcagatcagtgatgcctacagc
aaactgcttaccaagcaggtggcccaaggagaactcctggaggagttgaattcgctccca
gacatgtattctccagggacactggtcaggtgcatcgtgaccagtattgagaaaagtgcc
gatggacgtcgcagtgtcaagttatcgattgaccccaagaaggtcaacaagggcctgagc
tctacagcactagcagcaggcatgctgctctctggctctgtcttgagtgtggaagaccat
ggctacctcatagatattggtgtcactgggactcatgctttcctgcctcatcagaaagcc
aaaaattacatcaaagcagtcaagaaagggcctgacttgaaaataggccagaacctgaac
tgcctcattgtggaagtgaagaatgaaggcagggtggtctgtttgtccattgaccgatca
gaggtggctgcatccgttgcctcagagcgacagaactgggcactctctaatttattgcca
gggctggtggtgaaagctcgagtgcagaaggtggctccacttgggatgaaactgacattt
ctgtcttacttcactggcattgtggatttcatgcacatggacccagagaaatccatgagc
tattctccagatcaagtggtgaaggcctgtgtgctgtctgtacaccccacgtcgagggcg
gtgcggctgacgctgcgcccgcccttcctgcaccccgggggagccccacgccagctcccc
ggccagcgcatgggggcagtgctggaggaggccatggtgaaagccttctacaagcagttt
ggggctgtctttgagcttgatgatggcactcttgcatttgcacggttgaaacacctttca
aaaaccagaaaatcctttaaacctggggcgtttaaggaaggttgcaaacataaatgtcgg
atcatagactacagcctgatggatgagatgtgtgttgtatctctgaagcatcagattatt
gaagcacggtttctgcaataccaggatatccacacgggtgatgtggtgcagggcaaagtg
ctctctctaaaacccattgggatgcaggtgaaagtggctgatgggattagaggacttgtg
ccatccctccatctctctgatgtgatcctgaagcagcctgagaagaagtacaacatagga
gatgaagtcaagtgtcgggtccttgagtgcagtcctggaggaaagaagctgatccttact
ctaaagaaaagtcttgtccaatcaaagcttccagtcctctccagttatgaagatgcaaag
ccaggcctgatcacacatggctttgtagtgtgtgcaagggaatttggctgcattgtgaag
ttctacaatgatgtcaaaggtctggtacccaagaatgaactgggctcagatcccatatct
tgtccagataaagtcttctatgaaggccaggttcttaaagtaatggtcttaaaatgtgaa
cctcagcaggaaagactcttgttgtccttcagattatcaagcaagcctggccctgaggac
aaatggaaatgtactccaaaggagaaacaggaagtgaaatatcaaacaggagagatagtt
gatgtgaaaatcttgaagaagaaagataatgggttagaagtttccatcttagaagatgaa
gacaatgtggtagcctggatccccacactgcacctgtctgactttgttgctacctccaag
ctcctgtggcactgtcttcaagagggagatgtcctgcccagagttatgtatctaagtgtc
aagggagagcacattatcttgagcagaaagtctgcagtgatttctgctgtacaggaggag
caagttgtgagaagcttctctgaaatccagcctgacatgctgttgactggttatgtgagg
aatgtgatgccctttggagtgtttgtggagttcccttttggtgtgacaggactggcacct
aaagtgagcatgagtgacaagtttgtgacagacaccaaggaccactttgtggttggacag
actgtgattgcaaaggtgatgagcactgatgaggagaagcagcgtgtgctcctcaatctg
aaggtgtccgagtgcagctcaggggattctgctgcagagagctttgccctcctgaatcaa
tatttcaaggagctgaaagaaatcagggacttgttgagaagaggggaccccagcatttgt
gagttggtgcctgggaagggagtgcatctggtcgtgcaggacgtgagggaggatggctca
gcactgttcagtggcagctctgtcacaggcttgactgtaactgccacccgctaccatttg
ggagacaaaaatattgctcctggtgagaaaaggaaggccattgttcttcatgtggatgcc
ctcacatccgaggtgtatgtttctcttcgggaagagctgttaaagcaaagacccaagcga
cggctccgagagaactcccagcactctgcggtggtgcagcacatcacagagcactttgcc
atcgtgtctctgctggaaacaggccagctggcagctgtccccatcgcctgccacttcaac
gacaccttccgcttcgactcagagaaactgggggtgggacagacaatctctataacctta
aaagcagtgaaggagaatgaccacggggtcttgccagcagtacaaggcccagccaagaag
aatgtttttgtaagggtgaggaacgaatcggagacggcattagaggaggtgcttcctgct
gtgaaacactcgctgtccccgggggatgttgttactggtaccgttaaatccgtcaaacca
acccacgtcactgtggctattgatgacaagctgacaggttcaatccatgcctctcggatt
ctggatgaagtgcccctaggctcttttccaacttctactctgaaagctggacagaaagtg
actgctcgagtcattggaggcagagatgtgaatactcacaggtacctgcctattacccat
ccacacttcacacaatccattccagagctcagcattcgaccaagtgaaaaagaaggggaa
ttcacagcaatgctgaaccttaaagaagacagttccctcaagaaactcggactgtacaat
gttggacagacagtcacctgttttgtaaagaagtataacgtgctcaaaaactggctggag
gtagaagttggccctgacattcgaggaagagttcctcacctgctgctgtctctgaacacc
aaggtcttaaaacatccagaaaagagctttaaaaatggccaggcaatatcagctacagtg
actggaacagatgccactgaaacaaacctctgcttgtcactcacaggaattcagtcactg
gagcaggacaccatctctgtaggcatgataacaaaggtgactccacacattggtttgacc
attgcactgccaggtgggaagactggcaaagtcagcatctttcacctgagtgatacttac
acagaggaccctctggggaagttcaaagttggcaagattgtcaggtgttacatcctctcc
aatgagaatggtaaaatccagctatctctccggcagtcccggctaaatccgaaggtgaac
agcaaagtggaggatattgaaatagtgagtattaaggatgttaaaaaaggccagctagtg
agaggctatgtcaaatcggttactccatcaggtgtattctttggcttgtccacttctctc
ctgggtcgaatcctgttccagaatgtttccccgtactttgtacagaaacactccttatac
gaaaagtacctgcctgagggaaaactgctcactgccaaagtgcttggtgtaaatagaaga
gaaaaacatattgagctctctctcctgcctgaggacactgggatgccaagtgtcttgcct
gaatccctaggcctaccacaatatggtgcagaggaagagaaaaaagagccagatgatgaa
caaagagaagagcctaagctgaagacaaaaaggagaagaggaaattctgaaagtggtcag
gaggcaaagccaaagaagaggaagatctgcccagcagaggaaaatgacagtggaattgag
gtgtattaccgtgaggaggatgaccaggaggaagaggcaactgaaaagaaatctaaggtg
aggaagcctggtgaagctcccaggctgcaagtttccatgggcttcacctgggatgaagac
aatgcagtggatatacctgtgctggatcagaaagaagagagctcggagagcgaggaggag
gaggatatgcagtccaagctaaagaaacaaacaaagaaggagaaggagctggagaagcag
aagaaggagaaggagctttgcagagtagaggcagctctaatggacccgagtcggcagccc
cagtcagcagatgacttcgaccgcctggtgctgggcagtcccaacagctccatcctctgg
ctgcagtacatggctttccacctccaggctacagagattgagaaggccagagctgtggca
gagagagcacttaaaacaatcagtttcagggaagaacaggagaagctgaatgtctgggta
gctctgctgaacttggagaacatgtatggtactgaggagacactgatgaaggtctttgag
agagcagttcaatacaatgaacctctgaaagtcttccagcatctgtgtgacatctatgcc
acttctgagaagtacaagcaagcagaagaattgtaccacacgatgctgaagcgtttccgt
caggacaaatccgtgtggctgaaatatgcctctttcctcctgaagcaaggccagactgag
gctacacacaggctcctggagcgtgctctcaaggctctgcccaccaaagaacatttggat
gtcatttcaaggtttgcacagctggagttccattctggggacaccgaacatgccaaggcc
ctctttgagagcactctcagcagctatcccaagcgaacagacatttggtccatctacatg
gacatcatgatcaagcatggcagccagaaggaagtacgggacatctttgagagggtcata
cacctgagcctggcaccaaagaagatgaaattcttcttcaaacgctacctggattatgag
aagaaatttggtacagcagaaagtgtcctgggtgttaaaagagcagcactggagtatgtg
gagaccaagagttcccttgctgaaacctaa
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