Corvus cornix (hooded crow): 104695877
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Entry
104695877 CDS
T03546
Symbol
PRPF39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X2
KO
K13217
pre-mRNA-processing factor 39
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccw03041
]
104695877 (PRPF39)
Spliceosome [BR:
ccw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
104695877 (PRPF39)
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_PRP39_N
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_12
TPR_16
TPR_MalT
TPR_11
Motif
Other DBs
NCBI-GeneID:
104695877
NCBI-ProteinID:
XP_010408230
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All DBs
Position
5:806524..821550
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AA seq
543 aa
AA seq
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MQGPLRFEDQDSARGDQNIAMFYPTSTRMVYRRGLQAIPLSVDLWIHYINFLKETLDPAD
PETNSTIRGAYEHAVLAAGTDFRSDRLWEMYINWENDQGNLREVTSIYDRILGIPTQLYS
HHFQRFKEHIQNNLPRDFLTTEQFVQLRRELAAASGHSGEDGDELPCGTEDITDPAKLIT
EIENMRHRIIEIHQEIFNHNEHEVSKRWTFEEAIKRPYFHVKPLEKIQLKNWKEYLEFEI
ENGTHERVVVLFERCVISCALYEDFWIKYAKYMENHSIEGVRHVYSRACTIHLPKKPMVH
MLWAAFEEQQGNIDEARRILKTFEECILGLAMIRLRRVSLERRHGNMEEAEQLLEDAVRN
AKSISEASFYAIKLARHLFKVQKNLPKARKVLSEAIELDKENTKLYLNLLEMEYSGDLKQ
NEENILSCFDKAVHGALSIKMRITFSQRKVEFLEDFGSDVNKLLDAYDEHQALLKEQETL
KRRAENGSEEPDEKKLLTEDPSLASAQLMDGDMQVNQAAYNYNAWYQYNYQNAWNYGQYY
HTT
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgcagggaccgctgcgctttgaagatcaagactctgcacgtggagatcagaacattgcc
atgttctatccaacctccacccgaatggtctatcgccgagggcttcaggcaattcctctt
agtgttgatctttggatacattatataaacttcctaaaggagaccttggaccctgctgat
cctgaaactaacagtaccatccggggagcctatgaacacgcagtgctggctgctgggaca
gatttccgttctgacagactctgggaaatgtatataaactgggaaaatgaccagggaaac
ctaagggaagttacatccatctatgaccgcatcctgggaatcccaacgcagctctacagc
catcatttccagaggtttaaagagcacatccagaacaacctgccccgagacttcctgacc
actgagcagtttgtgcagctgcgccgggagctggcggccgccagcggccacagcggcgag
gacggggacgagctgccctgcggcaccgaggacatcaccgaccccgccaagctaatcact
gagatagagaacatgaggcacagaatcattgagatccatcaggagatatttaaccacaat
gagcatgaagtcagtaagaggtggacgtttgaggaagcgatcaagaggccttactttcat
gtaaaacctctggagaaaattcagctgaaaaactggaaagagtacttagagtttgagata
gagaatggcactcacgagcgagtcgtggtcctctttgagagatgtgtcatttcatgtgcc
ctctatgaggacttctggatcaagtatgccaaatacatggagaaccacagcatcgagggc
gtgaggcacgtgtacagcagggcctgcaccatccacctgcccaagaagcccatggtgcac
atgctgtgggcagccttcgaggagcagcagggcaacattgatgaagccagaaggatcctg
aagacatttgaggagtgcatcctggggctggccatgatccgcctgcgcagggtgagcctg
gagcgccggcacggcaacatggaggaggcagagcagctgctggaagatgctgtcaggaat
gctaagtccatcagtgaagcctccttctatgccatcaaactcgcccggcacctcttcaaa
gtgcagaaaaacctgccaaaggcaagaaaagtgctgtcagaagccatagaactggacaaa
gaaaacaccaaactgtacctgaacctgctggagatggagtacagtggtgacctcaagcag
aacgaggagaacatcctgagctgctttgacaaggctgtccatggggccttgtccatcaaa
atgaggatcacattctcccagagaaaagtggaattcctggaagattttgggtctgatgtg
aacaagctcctggatgcctacgacgagcaccaggcgctgctgaaggagcaggagacgctg
aagcggcgggcggagaacggctcggaggagccggacgagaagaagctgctgacggaggac
ccgagcctggcgtcggcgcagctcatggacggggacatgcaggtcaaccaggccgcctac
aactacaacgcctggtaccagtacaactaccagaacgcctggaattacggacagtattac
cacacaacttga
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