Corvus cornix (hooded crow): 104696072
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Entry
104696072 CDS
T03546
Symbol
PCDH12
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-12
KO
K16499
protocadherin delta 2
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ccw04515
]
104696072 (PCDH12)
Cell adhesion molecules [BR:
ccw04515
]
Cadherins
Protocadherins
104696072 (PCDH12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
104696072
NCBI-ProteinID:
XP_039415539
LinkDB
All DBs
Position
13:complement(12481193..12491706)
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AA seq
1187 aa
AA seq
DB search
MPRPCGGREDSPGMRWPAGQPMAARRGRGGSASGVFGLSRSALQLPALWWWYLFLSADAQ
EVATFTVQYRVLEEVPPGTVIGSLAEHFEGGESGEAAETFQLMETPGRFPLHVGSGDGVL
STAGRVDREQLCRHSDPCWVSFDVLAAQNPALIHVEVQVMDVNDNAPRFPTPELELEISE
SASLRTRIPLDRALDADAGPNARCTYALSPSEHFALDVVSSSDGTRHAELVVVKEVDREL
HSSFDLVLTATDHGEPPRSGTALIKVIVLDSNDNSPVFAESSLTVEVREDALPGTLLVMV
TATDPDQGPNGEIEYSLSRHAPPEVLSTFSIDARTGSVLLRLPLDYEETHAYELDVQARD
LGANPIPAHCKVLVKVLDVNDNAPDVHVTWAARVPVLSEALPKDSFVALVTASDPDSGSN
GQVLCSLSQGHEHFRLKRTNSHSFALLTNASLDRERRAEYNLTLVVRDMGDLSLAVLKHL
TICISDVNDNAPAFEKAAYEAAVAENSEAPAFLLTVRATDPDLGFNGKVTYRILDPSALG
LVSVDPTTGDVFALQVFDYEQVRSLEFLVTAEDGGHPKLASNISIRLAVLDQNDNAPIIT
TPALVGGVATLSVLVNADTGCCWVVPGNGSTQGAAAVTNSTLVSCPGSPLLFTIVARDVD
SGINGALRYDLVGGDDAGLFILDPLLGQVSLNTSNASSLAGSLRELLVRVSDQGDTPLHT
LARLRLLFRHHGAFSKMSARDPGWPSLSVVVVICLAALLGGCLLLLALTLSLRKKDKKDG
MAYNCREAEDARRQQQLKKPHRQIQKADIHLVPLLRGRPREPEPPRPCQEEQPGTATPAA
GGSPQAPLHLTPTLYRTLRNQRTQKDSEEQQGTFDLPILQRRPCQPHRPKHLVKEPGSPP
EAPLHGKSLVKPPMGEPQVPPEHPVGAGGAGQPQPHQQILRSLVRLSLVALAEQSPTGEF
AMESPPVQQISQLLSLLHQGQFQPKTNYRGNKYTAKNGSRAAGLDTGLDTGLDTGLDTGL
DTDCLSTKDSGHGESEAGDRDCDSAFELSVQQLVGEELETLLEPQAELALKRLTAADPAW
VARLSLPLTSSYKDNVFSPDSPRSPEDEEAARQEKPRTFETFGKGAGADPSGTGTRLAST
FLSEMSTLFEMILSQKVQVHSETGAGLLRQLSARGQSLGLGDTAPGL
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgccgaggccctgcggtggccgtgaggactctccggggatgcggtggccggcgggacag
cccatggcagcgcggcggggccgcgggggctcggccagcggcgtgttcgggctgagccgc
tcggcgctgcagctgccggcgctgtggtggtggtacctgttcctgagcgccgatgcccag
gaggtggccacgttcacggtgcagtaccgggtgctggaggaggtgcccccgggcactgtc
atagggagcctggccgagcacttcgagggcggcgagagcggagaggctgcggagacgttc
cagctgatggagacgcccgggaggttcccgctgcacgtgggcagcggggatggggtgctc
agcacggccgggcgggtggacagggagcagctgtgccggcacagtgatccctgctgggtg
tccttcgacgtgctggccgcccagaacccggccctgatccacgtggaggttcaggtgatg
gatgtcaacgacaacgcgccgcggttccccacgcccgagctggagctggagatctcggag
agcgcgtccctgcggacacggattccgctggatcgagccctggatgctgatgctggcccc
aacgcccgctgcacctacgccctctcccccagtgagcacttcgctctggatgtcgtctcc
agctccgatgggacgaggcacgcggagctcgtcgtggtgaaggaggtggaccgggagctg
cactcctccttcgacctcgtgctgacggccactgatcacggggagccaccacgatcaggt
actgctttgattaaagtcattgtcctcgactccaacgacaacagccccgtgtttgcagag
agctccctgacggtggaggttcgggaggacgccctgcccgggaccctcctcgtgatggtc
acggccaccgaccctgaccagggtcccaacggggagatcgagtacagcctgagcaggcac
gcgccccccgaggtgctgagcaccttcagcatcgacgcccgcacgggcagcgtcctcctg
aggctccctctggactacgaggagacccacgcctacgagctggatgtgcaagcgcgggac
ctgggtgccaaccccatcccggcacactgcaaggtcctggtcaaggtcctggacgtcaat
gacaacgctcccgacgtccacgtcacctgggccgcgcgggtgcccgtgctctccgaggcc
ctccccaaggacagctttgtggccctggtgacagccagcgaccccgactcgggaagcaac
gggcaagtgctctgctccctcagccaagggcacgagcacttcaggctgaagaggaccaac
agccacagctttgcgctgctgaccaacgcctcgctggaccgcgagcggcgtgctgagtac
aacctgacgctggtggtgcgggacatgggggacctgtccctggccgtgctgaagcacctc
accatctgcatcagcgacgtcaacgacaacgccccagccttcgagaaggccgcctacgag
gctgctgttgccgagaacagtgaagcacctgccttcctgctcaccgtccgtgccaccgac
cccgacctgggcttcaacgggaaggtcacctacaggatcctggacccctctgctttgggg
ctggtctcagtcgaccccaccactggggacgtttttgccctccaagtttttgattatgag
caggtgaggagcctggagttcctggtgaccgcggaggatggagggcatcccaagctggca
tccaacatctccatcaggctggctgtgctcgaccagaacgacaacgctcccatcatcacc
acgccagcgctggtgggaggggtggccacgctgtctgtcctggtcaatgcggacactggg
tgctgctgggtggtccccgggaatgggagcacccagggagctgcagcagtgaccaattcc
acactggtgtcatgccctggcagtcccctcctcttcaccatcgtggccagggatgtggac
tccggcatcaacggggctctccggtatgatctggtgggtggggatgatgccgggctcttc
atcctggaccccctcctggggcaggtgtccctcaacaccagcaatgccagcagcctggcc
ggcagcctgcgggagctgctggtgcgggtgagtgaccagggggacacccccctgcacacc
ctggcccggctccgcttgcttttccggcaccacggggctttctccaagatgtcagcccgg
gatcccggctggccgagcctctccgtggtggtggtgatctgcctggccgctctcctgggc
gggtgcctgctgctgctggcgctgaccctgtccctgcgcaagaaggacaagaaggacggc
atggcctacaactgccgggaggcggaggatgcccgcaggcagcagcagctcaagaagccg
cacaggcagatccagaaggccgatatccacctggtcccgctgctccggggccgcccccgg
gagcccgagcccccccggccctgccaggaggagcagcctggcacagccacccccgcggcc
ggggggtccccacaggctccgctccacctcacccccactctctacaggaccctgagaaat
cagaggacacaaaaagactcagaggagcagcagggcaccttcgacctgcccatcctgcag
cgccggccctgccagccccacagacccaaacacttggtgaaggagcctgggagccccccg
gaggcaccgctgcacggcaagagcttggtgaagccacccatgggagagccccaggtgcca
cccgagcatcccgtgggtgcggggggagccgggcagccccagccccaccagcagatcctc
aggagcctggtccggctgtcgctggtggccctggcggaacagagcccgaccggggagttc
gcgatggagtcacccccagtgcagcaaatctcccagctgctctccctgctgcaccagggc
cagttccagcccaaaacaaactacaggggaaacaagtacacggccaagaacggcagcagg
gctgcagggctggacacggggctggacacagggctggacacggggctggacacggggctg
gacactgactgcctgagcaccaaggacagcgggcacggcgagagcgaggccggggaccgc
gactgcgacagcgccttcgagctctcggtgcagcagctcgtgggagaggagctggagacc
ctcctggagccccaggcagagctggccctcaagaggctgacagctgcagacccagcgtgg
gtggcccggctgtccctgcccctcaccagcagctacaaggacaacgtcttctcccccgac
tcgccgcgctcccccgaggacgaggaagctgcgaggcaggagaaaccaaggacctttgag
acctttggcaaaggtgctggggctgaccccagtggcactgggaccaggctggccagcacg
ttcctgtcggagatgagcaccctgtttgagatgatcctgtcccagaaggtgcaggtgcac
agcgagacgggcgcggggctcctgcggcagctgtcggcccgcgggcagagcctcggcctg
ggggacactgccccagggctgtag
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