Corvus cornix (hooded crow): 104696258
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Entry
104696258 CDS
T03546
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccw03016
]
104696258 (RTCB)
Enzymes [BR:
ccw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104696258 (RTCB)
Transfer RNA biogenesis [BR:
ccw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104696258 (RTCB)
Prokaryotic type
tRNA splicing ligases
104696258 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104696258
NCBI-ProteinID:
XP_039427220
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All DBs
Position
1A:52789647..52801264
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMRVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgccgaacatgcgtgtggagggcgttttctacgtgaatgac
ccgctggagaagctgatgttcgaggaactgcgcaatgcctgccgcggcggaggtgcgggg
ggcttcttgcctgctatgaaacagatcgggaatgtggcagcattacctggcattgttcat
agatcaataggccttccagatgtccattctggctatggatttgctattggcaacatggct
gcctttgatatgagtgatcctgaagcagtggtttcaccaggtggtgtcgggtttgacatc
aactgtggtgtccgcttgctgcggacaaatctggatgaaagtgatgtgcagcctgtgaaa
gaacagctcgcccaggctatgtttgaccacattcctgtgggtgtcggctccaaaggcgtc
atccccatgaatgccaaggatttggaagaggcactggagatgggtgtggactggtctctc
cgggagggctatgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgctg
caggccgaccccaacaaagtctcttcaagggcaaagaaaaggggcctgcctcagctgggg
accctgggagctggaaatcattacgccgagatccaggtggtggatgagatttacaacgaa
tatgctgccaagaaaatgggcattgaccacaaagggcaggtgtgcgtgatgatccacagc
ggaagcagagggctgggccaccaggttgccacagatgcactggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaatgatcgccagctggcatgtgccaggattgcctct
gcagagggacaggattacttgaagggaatggcagctgctggcaactatgcctgggttaac
cgctcttccatgaccttcctaacacgacaggcctttgccaaagtcttcaacacaacccca
gatgacctggacatgcacgttatctatgatgtgtctcacaacattgccaaggtggaacag
catgtagtggatggaaaggagcggactctgctggtgcacagaaagggatcaaccagggcc
ttccctcctcaccatcctcttattgctgttgattatcaactgactggacagcccgttttg
atcggtggcacgatgggcacctgtagctatgtcctcactggcacagagcaaggcatgact
gagacctttggaactacttgccatggagctggccgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtactggacaagctggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaacgtgactgat
gtggttaacacctgccacgaagctggcatcagcaagaaagccattaaactgagacctatc
gctgttataaaaggctag
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