Corvus cornix (hooded crow): 104696609
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Entry
104696609 CDS
T03546
Symbol
ERCC6
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X2
KO
K10841
DNA excision repair protein ERCC-6
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
104696609 (ERCC6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccw03036
]
104696609 (ERCC6)
03400 DNA repair and recombination proteins [BR:
ccw03400
]
104696609 (ERCC6)
Chromosome and associated proteins [BR:
ccw03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104696609 (ERCC6)
DNA repair and recombination proteins [BR:
ccw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
104696609 (ERCC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
DEAD
TFIIF_beta
Motif
Other DBs
NCBI-GeneID:
104696609
NCBI-ProteinID:
XP_010409299
LinkDB
All DBs
Position
6:17659454..17704659
Genome browser
AA seq
1486 aa
AA seq
DB search
MPTDKSHLPDSIQEQESATTSSNNCLHNDEELGIGQENGICDNGAGNSIGIPNSDSQAST
SMAVPLEMPRRGHPLLQINRQQIQSVSCSAHAAELKDLGVDVYDQDVLEQGVLQQVDNAI
NEATKAAKIANASKEYESVLEDLRSCTTSLRHINKIIEELSPQAADNKNINRKLDSVKRQ
KYNKEQQLKKIKAKQKRLQGILGLTEFADEANEIGYEEDEEPGPSSLGSMLMPAQETEWA
ELIRTGQMTPFGTKIPQKPERKARQLRLNEASDFEKYLADQAKLSSERKKLSRRKGAKKK
AQAKDVECVAPAAATKEKNGKALSKTDKRLKKHLRELQKHALQIHSKARIPKEKKYPETK
KFRHEQEDDSGESDCVPDEEIFDPEAAEEEEQASSFAENDSDYELKHLSRKRKHLVKKSF
KEAENDADFVPSSEEEEDTPGKHKMRRWRDDGDVDYYKQRLRKWQKERLKDKEHETAEEL
SEESDVEFEEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAF
LAGLSYSNMRTRGSNYRYQGLGPTVIVCPATVLHQWVKEFHTWWPPFRVAVLHETGSYTK
SKVKLIHEIASCHGILITSYSYIRLMQDNIHTYDWHYVILDEGHKIRNPNAAVTLACKQF
RTPHRIILSGSPMQNNLKELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYCNASPVQVK
TAYKCACVLRDTINPYLLRRMKADVKMSLSLPDKNEQVLFCRLTEEQRQIYQNYINSKEV
YQILNGDMQILLGLSTLRKICNHPDFVADSPRILKSVPDAEAEDPNQFGYWKRSGKMIVV
ESLLKIWHKQGHRVLFFTQSRQMMQILEVFVRYRNYSYLRMDGTTAVASRQPLVTRYNED
KSIFLFLLTTRVGGIGVNLVGADRVIIYDPDWNPSVDTQARERAWRIGQKKEVTVYRLLT
AGTIEEKIYHRQIFKQFLTNRVLKDPKQNRFFKSNDLYELFTLNSPDVSQGTETSAIFAG
TGSDVQVPKPPDNGTSKHDLHLAESSSHKKIKSSNSYSTTHMKDSSSKAIDTSEETKGNL
EASDQNSYTKDNAQAGTDVNSFNKSQEECLEGDDKCTSHSMPCNAGSSENAKCVTAVVAG
EGHGADARADLTLSCGAAGSWEKQEAKTEDGQFDNNHSKCISKTKHRVDMLSHESHKDKS
KKKHHKDAKFEGKRIPHLVKQKQYRRENSEEEQDSKKNDDYVLQKLFKKSGVHSVMKHDA
IMDASSADHVLEEAEASRVAQDALRALRLSRQQCLGAASGVPTWTGTSGLSGAPSGVKSR
FGQKRNSMLLSSLSTCASPAKKHKDADTIKKQTIKKCSSSEHFNGKSGESSSSALDSSSL
LARMRARNHLVLPQQTRNEGDENHHPAPAPVQGSTEYDELLVDLRNFLAFQGRVDGEAST
RELLQEFESKLPAEHSCVFRELLRNICTFHRSPNGEGVWRLKPEFR
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atgccaacagataagagtcatctgccagacagtatccaagaacaagagtctgccactact
tcaagcaataattgcctgcataatgatgaggaattgggaattgggcaagaaaatggcatt
tgtgacaatggagcgggtaatagtattggaattcccaactctgacagccaggcttccact
tccatggctgttcctttggagatgcccagaagaggacatccccttttacagatcaacagg
cagcagattcagtctgtctcatgtagtgcacatgctgctgagctcaaagatttaggagtt
gatgtctatgaccaggatgtgttggagcaaggagttcttcagcaagtagataatgcaatt
aatgaagcaactaaagcagcaaaaatagctaatgcatcaaaagaatatgagtcagtactg
gaggatttaagatcatgtacaacatctctgagacacataaataaaattattgaggaactt
tcacctcaagctgctgacaacaaaaatattaacagaaaactagattcagtaaaacggcaa
aaatataacaaggagcaacagctgaagaagataaaagcaaaacaaaaacgtctccaagga
atacttggtttaacagagtttgctgatgaagcaaatgagattggatatgaggaagatgaa
gaacctggtccatcttctcttggcagtatgcttatgcctgctcaggaaacagagtgggca
gagctcattcgaactggtcagatgactccatttggaactaaaatacctcagaagccagag
aggaaggcacgacagttaagactaaatgaagcatctgattttgagaagtacttagcagac
caagctaagctgtcatctgaaagaaagaagttatcccgtcgcaaaggagcaaagaagaaa
gcacaagccaaagatgttgagtgcgtggctcctgcagctgctacaaaggaaaaaaatggc
aaagccctctccaaaacagataaacgcttaaaaaaacatttgagagagcttcagaagcat
gcccttcagattcattcaaaggccaggattccaaaagaaaagaagtatcctgagaccaag
aaattcaggcatgaacaagaggatgatagtggggagtctgactgtgttcctgatgaggag
atctttgatccagaagcagcagaagaggaagaacaggcgtcttcttttgctgagaacgat
tctgattatgaacttaagcatttatcaagaaaaagaaaacatttggtgaagaagagtttt
aaagaagctgaaaatgatgctgacttcgttccaagctctgaagaagaagaggatacacca
gggaagcacaaaatgagacgatggagagatgatggagatgtggactattataaacagaga
ctaaggaagtggcaaaaagaacgtttgaaggacaaagaacatgaaacagctgaggaactt
tctgaagaaagcgacgttgaatttgaagagggtttcaaagtaccaggatttctcttcaaa
aagctttttaagtaccagcagacaggtgttaggtggctttgggaattgcactgccagcag
gcaggaggaattctgggagatgagatgggattgggcaagaccattcagataattgccttc
ttggcaggtctgagctacagcaatatgaggactcgtggttcaaattacaggtaccaggga
ttgggtccaacagtgattgtttgtccagctactgtgttgcatcagtgggtaaaagaattc
cacacttggtggcctccatttagagtcgctgtgctccatgaaactggttcttatacaaag
agtaaggtgaaattaattcatgaaatcgcttcctgccatggaattttaattacgtcttac
tcgtacattcgactgatgcaggacaacatccacacgtatgattggcattatgtcattctg
gatgagggtcacaaaatccgaaatccaaatgctgcagtcacacttgcatgcaagcagttc
cgcacaccccatcgaatcatcttgtctggctcccctatgcaaaataacctaaaggagctc
tggtccctttttgactttatattcccaggaaaactgggaacactacctgtgttcatggag
cagttttctgtcccaataaccatgggaggatattgcaatgcctctcctgtccaggtaaaa
actgcgtacaaatgtgcctgtgtgttacgggacaccataaacccctacttgctgcgaaga
atgaaggctgatgtaaaaatgagcctttcgcttccagataaaaatgaacaggtcctcttt
tgccgtttgacagaggagcagcgtcaaatctatcaaaattacatcaactctaaagaagtt
taccagattctcaatggagacatgcagattctcttaggactatcaactttgagaaagatt
tgcaaccaccctgactttgttgcggatagtcccagaattttgaagagtgtgccagatgct
gaagcggaggatccaaatcagtttggatattggaaacgttctggaaaaatgatagtggta
gaatccttgctgaaaatatggcacaagcaaggtcacagagtgttgttttttactcagtca
agacagatgatgcagatacttgaagtctttgtgagatatagaaattattcctacctcagg
atggatggcaccacagcagtagcttccaggcagcctcttgtaacaagatacaatgaggac
aaatccatatttctctttcttctaacaactcgtgttggtggcattggagttaacttggtt
ggtgctgaccgcgttattatctatgatcctgactggaatcccagtgtagacacacaggct
cgggaacgtgcttggagaataggccaaaagaaagaggtgactgtgtacaggcttctcact
gcaggtactattgaggagaagatataccacagacaaatcttcaaacagtttttaacaaac
agagtgctgaaagaccctaagcagaatcgcttcttcaaatccaatgacctttatgaacta
tttactctgaacagcccagatgtatctcaggggacagaaacaagtgcaatttttgcaggt
actggttcagatgttcaagtcccaaagccacctgataatggcacttctaaacatgatctc
catcttgcagaaagcagctcgcacaagaagataaagtcctccaattcctattccaccaca
cacatgaaagattcttcttctaaagcaatagacacaagtgaggaaaccaagggaaatttg
gaagcctctgaccaaaatagctacacaaaagataatgcacaagctggtactgatgtaaat
tcgttcaataaaagccaggaggaatgcttggaaggtgatgacaaatgcacatcccactcg
atgccatgcaatgcagggtcttcagagaatgccaagtgtgtgactgctgtggtggctggt
gaaggacatggagcagatgccagggcagatcttaccctttcttgtggtgcagctggctct
tgggaaaagcaggaggctaaaacggaagatgggcaatttgataataatcattctaagtgt
atctcaaaaacaaagcacagggtggatatgctgtcacatgagagccacaaagataagtct
aagaagaagcatcacaaagatgccaaatttgaaggaaagcgcattcctcatctagtgaaa
caaaagcagtatagaagggagaacagtgaagaagaacaagactcaaagaaaaatgatgac
tatgtcttgcagaaacttttcaaaaaatcaggggtacacagtgttatgaagcatgatgcc
attatggacgcttccagtgcagatcatgtgctggaggaagcagaagcaagcagagtggcc
caggatgccttgagagccttaagactctctcgtcagcaatgtttaggagctgcttctggt
gtgccaacctggacaggaacaagtggtctctcaggtgcaccatcaggagtaaagagtcgg
ttcggtcaaaaaagaaactccatgctgctttcttcactttccacttgtgcatcacctgca
aagaagcacaaggatgcagatacaataaagaagcaaactataaagaagtgtagttccagt
gagcactttaatggaaaatctggagaatcgtcatcaagtgctctggactcttcatcttta
ttagctcgtatgagggcaagaaaccaccttgttttaccacagcagacgaggaatgagggt
gatgagaatcatcacccagcaccagccccagtccagggttcaacagaatacgatgagctg
ctcgtagatctacggaacttcctggcgttccagggccgcgtggacggcgaggccagcact
cgggagctgctgcaggaatttgagtccaaactgcctgcagagcactcctgtgtcttcaga
gaactgctccgcaatatctgcaccttccataggagcccaaatggggaaggggtctggagg
ctaaagccggaattccgatga
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integrated database retrieval system
