Corvus cornix (hooded crow): 104696692
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Entry
104696692 CDS
T03546
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104696692 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccw04131
]
104696692 (VPS8)
Membrane trafficking [BR:
ccw04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104696692 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
zf-RING_Vps41
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
Clathrin
zf-RING_11
TPR_Vps41
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_UBOX
Beta-prop_WDR5
Beta-prop_HPS5
WDR55
Beta-prop_WDR3_1st
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
104696692
NCBI-ProteinID:
XP_039412743
LinkDB
All DBs
Position
9:complement(24548566..24617117)
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AA seq
1396 aa
AA seq
DB search
MAAAPEPAEPEPCPEPPAHRLSVVELDRELDSRSELIDDKEFDIPQVDTPPTLESILNET
DDEEESFILEDPFLLNIDNTDTHSYDTSSVASSDSGDRTHLKRKKKLPDSLSLHGSVIRL
SLLKGISAQIVSAADKVDAGLPTAIAASNLIAVGTSHGLALIFGKDQNQALRLCLGSTAV
GAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDD
PTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKVDLRDHPITQY
SLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNSVNPMLAFCRGD
VVHFLLVKRDDTGAIHVTKQRQLHLHYDLINFTWINSRTAVLLDSVEKLHVIDRQTQEEL
ETVEISEVQLVYNSSHFKSLATGGNVSEALALVGEKACYQSISSCGGQIFYLGTKSVHVM
TLRSWRERVDHLLKQERLTDALALAWSFYEGKAKAVVGLTGDTSKRKAVIADRMVEILLH
YTDRTLKKCPDQGKIQVMEQHFQDVVPVIVDYCLLLQRMDLLFNQIYDKMSENSVAKGIF
LECLEPYILSDKLMGITAQVMKDLLLHFQDKNRLENLEACIVHMDITSLDIQQVVLLCWE
NRLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEQVVMGNKLLVYISCCLAG
RAYPLGDIPEDLVPLVKNQVFEFLIRLHSSEGSVDEEVYPYVRTLLHFDTREFLNVLALT
FEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPNNTLFVNRTL
FDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIQMAEKAEFYQICEFMYER
QLRYDKIIGCYLRDPLRKEEVFNYIHNILSMPGYSAEEKQLVWQKALDHIEELLVLSPGK
AADLAAIHFSEQIESIISNLQDQFLLFQFLRSLLDPREGINQDLLHLPPCISEQFIELLC
QYSPDQVLETLRVLEYCRLEETIQITQKHQLHEASSYLLEKKGDIHGAFLVMLERLQSKL
LMLTQDDESSAEPSLLENIEDTLMKTIALCQRNSHSLDQQQREALWFPLLEAMMSPQKSS
GSSQCPYSESLKSLTMQVLNNMAAFIALPSILQRILQDPVYGKGKLGEIQGLVLGMLDTF
NYEQTLLETTTSLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRRQETADEIIVF
SCGHLYHSLCLLSKECGMVTKGIMRWMCYKCNSSNKGGKLSENFSELKKGTAASLAQMSS
ESVLDPQQIQAFDQLCRLNRGTSRLALLTELARGGHGGGGDKHGLLSVSHGDPATSSVFQ
NENFQLRLTPPPLAEE
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcccccgagccagcggagcccgagccgtgcccggagccgcccgcgcaccgg
ctgagtgtggtggagctcgaccgtgagctggactctcgcagcgagctgattgatgataaa
gaattcgacattcctcaagttgatacccctccaacactggagagcatcctaaacgagact
gatgacgaagaagagtctttcattttggaggatccctttctcttgaacattgataacacg
gatacacactcctatgacacctcttctgtggccagctctgacagtggggacaggacacac
ctgaaaaggaagaaaaaactcccagattctctctcactccatggatcagtgatacggctc
tcactcctgaaagggatttctgcccaaatagtgtctgcagcagacaaagtggatgctggc
ttgcccactgcaattgcagcatcaaacctgatagcagtggggacctcccatgggttagca
ctgatatttggcaaagatcagaaccaggctctccggctgtgtctgggcagcaccgcggtt
ggggcccagtacggggccatctctgctctcagcatcaacaatgactgttccaggctgctc
tgtggctttgcaaaaggacagatcaccatgtgggatctggccagtgggaagctgctgcga
tcaataacagatgcccaccccccaggaacagccattttgcacatcaagtttacagatgat
ccaacacttgcaatttgcaatgacagcggaggctccgtgtttgaactgtcatttaagagg
gttatgggagtgaggacgtgcgagtctcggtgtctcttcagtggctccaagggggaagtt
tgctgtattgagccattgcacgcaaaggttgatttgagagaccatcctatcacccagtat
tcactgctggccatggcctccctcactaagattctggttattggcctgaagccatctctg
aaagtgtggatgacctttccctacggccgtatggacccttcaagtgtccctctgctggcg
tggcactttgtggctgtgcagaactcggtgaaccccatgcttgccttctgtcgaggagac
gtcgtgcactttcttctggtcaagagggatgatactggtgcaatccacgtcacgaagcag
aggcagcttcatctgcactatgatctcatcaactttacttggatcaactcacggacagcg
gtgctgctggacagtgtggagaagctgcacgtcatagaccgtcagactcaggaggagctg
gagactgtcgagatctcagaggttcagctggtctacaacagcagccacttcaagtctctg
gccacagggggcaatgtcagcgaggccctggcactggtgggagagaaagcttgttaccag
tctatcagcagctgtggtggtcagatcttctaccttggaactaagtctgttcatgtcatg
acattgagaagctggagagagagagttgaccaccttctgaaacaagaacgtctcacagat
gccctggctcttgcttggtccttttatgaaggtaaagcaaaggctgttgtaggcttgact
ggggacacgagcaagaggaaagcagtcattgctgacagaatggttgaaatccttctccat
tacaccgatcggactctgaagaaatgtcctgaccaagggaaaatccaggttatggagcag
cacttccaggatgtggtgcctgtcatcgtggattactgcctcctgctgcagcgcatggat
ctattatttaaccagatatatgataagatgagtgagaactctgtagctaaaggcatcttt
ctggagtgcttggagccatatatcttgagtgataagctgatgggaatcacagctcaagtg
atgaaagacttgctgcttcacttccaagacaagaacaggttggaaaacttggaagcctgc
attgtgcatatggatatcaccagtttagacatacagcaggtggttctcctgtgctgggaa
aaccgcctgtacgatgccatgatctacgtctacaacagcgggatgaacgacttcatcagt
cccatggagaagctgttcaaagtcattgctcctccactgaatgctgggaagtctctcaca
gatgagcaggtggtgatgggtaacaagctgcttgtatatataagctgctgcttggcaggc
cgtgcatatccgttaggtgatattcctgaagatctggtgcctttggtgaaaaatcaggtg
tttgagtttctgatccggctgcactcctctgagggttctgtggatgaggaggtgtatccc
tacgttcggaccctgctgcacttcgacacgcgggaattcctcaatgtgctggctctgact
tttgaagactttaagaatgacaagcaagctgtggagtatcaacagagaattgtggacatt
cttctgaaagtcatggtggagaattctgacttcaccccatcccaggttggctgtctcttt
acctttcttgcccggcagctcgccaagcccaacaacaccttgtttgtcaacaggacactg
tttgaccaggtgctggagttcctgtgcagcccagatgacgactcccggcattccgagagg
cagcaggtccttctggagctgctccaggcaggagggatcgtgcagtttgaagagagccgc
cttatccaaatggcagagaaggctgagttctatcagatttgtgagttcatgtatgaacgg
cagcttcgctatgacaaaatcatcggctgttacctgcgggatcccctgaggaaggaagaa
gttttcaactacatccacaacatcctgtccatgcctggctacagtgctgaggagaagcag
ctggtgtggcagaaagctttggaccatatagaggagctgctggtgctgagcccaggtaaa
gcagctgacttggcagccattcacttcagcgagcagatcgagagcatcatctcaaacctg
caggaccagttcttgctcttccagttcctgaggagtctccttgatccgagagaaggcatt
aaccaagacctgctacacctcccaccctgcatcagtgagcagttcatcgagctgctctgt
cagtacagcccggaccaggttttggagacactcagagttctggaatactgcagactggag
gaaaccatccagataacccaaaaacatcagctccatgaggcttcttcctatttactggag
aagaagggagatatccatggtgcctttttggttatgcttgagcgattgcagagcaagttg
ctgatgcttactcaagatgatgaaagctcagctgaaccttccttgctagaaaatattgaa
gatactttaatgaaaacaattgctctttgccagaggaattcacacagtttagaccagcaa
cagcgagaggccctgtggtttcccctgctggaggccatgatgtccccacagaaatcctct
ggttcgtcgcagtgtccatactctgaatctttgaagagtttgacaatgcaagtgctgaac
aacatggctgcatttattgctcttccttcaatcctgcagagaattctccaggatccagtt
tatggaaaagggaaacttggagaaattcaagggcttgtcctgggaatgctggacactttc
aactatgaacaaacccttctagagacaaccacgagccttttaaaccacgatctccactgg
tccctgtgtaacctgagagcctctgtcaccagaggccttaccccaaagcaggattactgc
tgcatctgtctccagcagtacaaaaggaggcaagaaactgctgatgaaatcattgttttc
agctgtggccacttgtaccactcgctgtgcctgctgagtaaggagtgtgggatggtcacc
aagggcatcatgaggtggatgtgctacaaatgcaactcaagcaacaagggagggaagctg
agtgagaacttctcagagctgaaaaaagggactgcagcatccctggcacagatgagttca
gagtctgtgttggatcctcagcaaatccaagcttttgaccagctctgccgactcaaccga
ggcacctcccgactggctctcctgacggagctggcgcgtgggggccacggcggcggcggt
gacaagcacgggctgctcagtgtttcccacggggacccggccaccagcagcgtcttccag
aacgagaacttccagctgcgcctgacgccccctccgctggctgaggagtag
DBGET
integrated database retrieval system
