Corvus cornix (hooded crow): 104696817
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Entry
104696817 CDS
T03546
Symbol
NUP54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104696817 (NUP54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccw03019
]
104696817 (NUP54)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
104696817 (NUP54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
XhlA
Motif
Other DBs
NCBI-GeneID:
104696817
NCBI-ProteinID:
XP_019148569
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Position
4:complement(1088005..1100174)
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AA seq
583 aa
AA seq
DB search
MPFTPVSNYAYLAHGDGKMLQLFFPGPSFHSELMLPCSFSASRSSGFGGLETANSTASGF
NFGGFGLTANPTVNFNIGNFGVSTTSTPPFNFGNSLASAGAFGGFGTTTTTAAPAFSFSA
PTNTGTTGLFGATQNKGFGFGTSFGTGTGTGLGSGLGTGLGFGGFGTQQQQQTTLGSGLF
NQPAQTPAQSNQLINTASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIAPVEF
TQENPFCRFKAVGYSLMPNNKDEDGLVVLVFNRKEADIRSQQQQLVESLHKILGGNQTLT
VNVEGVKTMPDDQTEVIIYVVERSPNGTSRRVPATTLYAHFEQANIKSSLQQLGVSLSMA
RTELSPAQVKQLLQNPPAGVDPIIWEQAKVDNPDPDKLIPVPMVGFKELLRRLKVQDQMT
KQHQTRLDIISEDISELQKNQTTTMAKIAQYKRKLMALSHRTLQVLIKQEIQRKSGYAIQ
ADEEQLRVQLDTIQCELNAPTQFKGRLNELMSQIRMQNHFGAVRAEERYYIDADLLREIK
QHLKQQQEGLSHLISIIKDDLEDIKLIEHGLNESIPIRGGVFS
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgccttttactcctgtttctaactatgcctatcttgcccacggggatggaaaaatgctt
caacttttctttcctggaccttcctttcactcagaactaatgttgccttgctctttttct
gcttcccgctcgtcaggatttggtgggcttgaaactgcaaactccactgccagtgggttt
aattttgggggtttcggattaactgctaatcccacggtgaattttaatattgggaatttc
ggtgtttccactacctcaactccaccattcaattttggtaacagtctggcaagcgcaggt
gccttcggaggcttcgggacaaccaccaccactgcggcaccagcgttcagcttctccgct
cccaccaataccggcaccactggactctttggtgctacccagaacaaaggctttggattt
ggtaccagttttggcacaggaactggaactggcttgggtagtgggttgggaactgggcta
ggctttggaggcttcggaacccagcagcagcagcagaccacactaggcagcgggctgttc
aaccagcctgcccagacacctgctcagtccaaccagctcatcaatacagccagtgccctc
tcggccccaacactcctgggagatgaaagggatgccattctggccaaatggaaccagctc
caggccttctggggcacgggcaaaggatacttcaacaacaacattgctccggtggagttc
acgcaagaaaaccccttctgcaggtttaaggctgtgggttacagtttaatgcccaacaac
aaggatgaagatggcctcgtggtcttggtgtttaacagaaaagaagcggatattcgaagc
cagcagcagcagctcgtagaatcactacacaaaattttgggaggaaaccagaccctcact
gtcaatgttgaaggtgttaaaacaatgccagatgaccagacagaagtgatcatttacgtt
gtggagcgctcgcccaacggcacctcgaggagagttcctgcaacgaccctctacgcccac
tttgaacaagccaacatcaaatcatccctgcagcagctgggggtcagcctgtccatggcc
aggacggagctgtccccagcacaagtcaagcagctcctgcagaaccctcctgccggtgtt
gatcctattatatgggaacaagccaaagttgataatcctgatcctgataagcttattcct
gtgccaatggtgggtttcaaggaactgttgagaagattgaaggtccaggatcagatgacc
aaacagcatcaaactcgattagatataatatctgaagatatcagcgagctgcagaaaaac
caaacgacaactatggcaaaaattgcacagtacaaaaggaaactgatggcactttctcac
agaactttgcaggtgttgataaagcaggagatccaaaggaaaagcggttacgccattcaa
gcagacgaggagcagcttcgtgtacagttggatacaattcagtgtgaacttaatgcaccc
acgcagttcaagggcagactgaatgagctcatgtcccaaatcaggatgcagaaccacttt
ggagcagtgcgggctgaagagcgctattacatagatgcagacctcttaagggaaatcaag
caacacctaaagcagcagcaagaagggctgagtcacctaatcagcatcatcaaggatgac
ttggaggacatcaaactgatagaacatgggctgaacgagagcattcccatcagaggagga
gtcttcagttga
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