Corvus cornix (hooded crow): 104696893
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Entry
104696893 CDS
T03546
Symbol
RP1L1
Name
(RefSeq) LOW QUALITY PROTEIN: retinitis pigmentosa 1-like 1 protein
KO
K19538
retinitis pigmentosa 1
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ccw03037
]
104696893 (RP1L1)
04812 Cytoskeleton proteins [BR:
ccw04812
]
104696893 (RP1L1)
Cilium and associated proteins [BR:
ccw03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
104696893 (RP1L1)
Cytoskeleton proteins [BR:
ccw04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
104696893 (RP1L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCX
DCX2_DCDC1
Motif
Other DBs
NCBI-GeneID:
104696893
NCBI-ProteinID:
XP_039424550
LinkDB
All DBs
Position
3:112714369..112759235
Genome browser
AA seq
2147 aa
AA seq
DB search
MTQVPADYLSNTSSYNYEPPLPSVARASTLTRVPPAKKITFFKSGDPQFAGVKMAINQRS
FKSFHALMDDLSHRVPLPFGVRTITTPRGIHCISELDQLEDGGCYLCSDKKYVKPISITS
GGHRPAPPRNSRPSSTTRRVAQEGKLEDYSTPFTYHGPRIPKKITLVKNGESGFRRSIIL
NRRNARSFKTLLDEITEILQFPVKKLYTVDGKKIDSMQALLHCPNVLVCVGREPFKPVSM
ENLRKHSVEKLPNLPPCSNNGNNVNENNEMNFGLKAKKSIIHPRSASSNRSMRFSLSSEK
SYPNGLAASPDNGAPFSNGCPHPKPGDLVQSLVNDDIEKRVHVNKDGSLSVEMKVRFRLL
NDETLQWSTQIKKSNLMNQLPCEESGVEEDSGVDPLQKMNPEASSEADDSLYPCDIDSYM
SKLEESECDEAHCHSCGKKHRDYDIWKNPIHTSQREEPSVQSTWHTRSSCSSTSSRRRVV
HKKMKSVDSIYTTSSEEYSEHIVQESSSYSETIKNRVAYRSVKKCMCRSDLSTGASNGEE
QQEHTRTSTGNSQRPSSLGLMSHSSCENNLDTQDTSEDHEITKTISQNEDENCFEASSVK
CLKGDAEEVESSRVGSVMSRSSLQSRQSKKNGCEETSSVGRSMSSSSLQKANQGDNTQCS
SPANSVHSKSSNGIMPKEKSEQGDPSDENPVVSSFSSESFPKKEAEEVEAEQEESEVNEA
SSVSAKTKPSQSIRGESSEGERCSTQGTHRSRASDRNSKKSGSDENVPCSVSCSSRGSKK
SKHSHVHLDAQSEISVSSLESTLNKKKHSLHADDGRSGSRASVFSKSSCETKKKSVGDAT
SHKSGSLHSNISSTSEAEATGGPAEEKSSKSTADGCSESSKSSKKRSHKEESNRPSSLCS
SSSSPNGKAGEGHAKISSELSSSKQGSMSGSVCSKVDHPAEDGIRNGNPTSSSSRVSSKS
EIKDKCVSTQISQETDDRCSQSNMSLSSKSRRTNKNNLHVKVNSSRASVSETMSVCSLHC
PAPPKGKPKRKNMRSIMLKNSSISSIGTESMLTAGKGQKEILDSSKATSYYSKSAATEVN
GQNNKETDDSCNKKAEGEIEDTGIQEEGGDLMPSALPNASPEEVVQEWLRKIPSETLLMK
YEMEDDGEEEGAESTTEVSHCTNAEEAPEEEKAEEKHEEEEAEKDEANDEAKDEAKADME
EEKAEDTAINEEAEECVNQEEISEAAPEAAKAEQAECKQSVTSSQNNNKRDLPSSVQTSV
QIMKALLSSKHETKFDRSNSLPEVSPTMGRKLSNSANILITCLASLQLLDEESEDPSENS
KLLNKSRYTELLNIFQALWFGCTAERSSPSSGQEASEQAKPVSASKAPKSMDHAFTPMSS
SGVDVCSGSSGSGEECTAGAVLVAQKTVEFKPAEQVENSEIGTELTEVEEKSKEEEQPSR
PSTACSEAKVEEKAESAREESLIQKEEENKEDQGSNCEQGQRKGEKMKMKKKKLAETGEL
EEAEAVNDEVPQENPEEADQPATTDDANVGDANGGTELKDELEGQPQEESPNDPEPKVDT
STSVTKSLVQQNSVDPDPTWVLRLLKKIEKEFMAHYVNAMNELKVRWNLQDNQQMDEMIL
ELKEDVGKRIQKSIEKELRKIRSRAGRRMPRPPEEPPTHESKLQTEQRRWRLQTMHKKSL
FGDKNGTQTRLEETSDLSFNVDKDFDLSAALEDSISKQSSEEEYCPCDSCVRKKLASRPA
RAPVVATNAPVMKAFDLKQILRLKKDDNKEAIIAEEAQDTKTLPNGSVEEGAENEEKDEG
EPQAGETEAEEDEGKEPELNEGDSTMLNGDGEEPEVAESQNAEVEDEAKNEETKEEEAEE
GGEETKEGEEEEAKEQEAEEKSKGEDEGENEAQETEEPEDEDVVADDEAETSECRGDTEG
SGTDNNPEGDAAEGNEEAEKDEVEAAEDAKPESGDEAEEKNSEGGEKPDGNDEEPTGDDP
DKAHEKHKDQGNNKISEKASKTKGKKTSKRLETLKKSTAFSCYSSVGNFSQQSQKGSDDE
EEGVVEEEGVVEEEGVIEEECKGDNNPMSDHPNGEVRSDESSKPSQMYPDSEEEEEDKES
SGSDPVEDEEQADAEGADPKETENTEEVQASKKKVSSDEIDQDDLDF
NT seq
6444 nt
NT seq
+upstream
nt +downstream
nt
atgactcaggtgcctgctgactacctgtcaaacaccagctcctacaactatgagccaccc
ctcccctccgtggctcgggccagcaccctcaccagggtccctccagccaaaaaaataaca
ttcttcaagagtggagaccctcagtttgcaggagtcaagatggccatcaaccagcggagc
ttcaagagcttccacgcgctcatggacgacctctcccatcgggtcccactgccgttcggg
gtccggaccatcaccaccccacgaggaatacattgcatcagtgagctggaccagctggag
gatggagggtgctacctgtgctctgacaagaagtacgtgaagcccatcagcatcacctct
gggggacacaggccggccccgccacggaacagtcgcccctccagcaccacgagaagagtg
gctcaggagggcaagctggaagattattccacacctttcacttaccatggccccagaata
cccaagaaaatcactctggttaagaatggggaaagtggatttcggcgctccatcatcctg
aaccgcagaaatgcccgcagtttcaaaacgctcctggatgagatcacggagatcctgcag
ttcccagtgaagaagctctacactgttgatgggaagaagatcgacagcatgcaggccctg
ctccactgccccaacgtgctggtgtgtgtcggccgggagccgttcaagcctgtatccatg
gagaatttgaggaaacactcagtggagaagctgcccaacctgcctccctgctccaacaat
ggcaacaatgtcaacgagaacaatgaaatgaacttcggactgaaagccaagaaaagcatt
atccatccacggtcagcatccagcaacaggtcgatgagattttccttgtcatcagaaaag
tcataccccaacggcctcgcagcctctccggacaacggggcacccttctccaatggctgc
cctcacccaaaacctggggacctggtccagtccttggtcaacgatgacatcgagaagcgg
gtccacgtgaacaaggacgggagcttgtctgtggagatgaaagttcgcttccgcttgctc
aacgacgagactttgcagtggtctacccagatcaaaaagtccaacttgatgaaccagctg
ccttgtgaagagtcaggggtggaggaggacagtggagtagatcccctacagaaaatgaac
ccagaagccagctcagaggcagatgattccttatatccctgtgatatcgattcctacatg
tccaaacttgaggaatcagaatgtgacgaggcccactgtcacagctgtggaaagaaacac
cgggactatgacatttggaagaaccccatacacacatcccagagggaagagcccagtgtg
caaagcacctggcacacgcgatcgtcgtgctccagcacatcttcccggaggagagtagtc
cacaaaaaaatgaagtctgtggatagcatctacaccacgtccagtgaggagtactctgag
cacattgtgcaagagtcctcatcctactcagagactataaagaacagagtggcatatcga
tctgttaaaaagtgtatgtgccgaagtgatttatctacaggtgcttccaatggagaagaa
cagcaggaacacactcggacaagcacaggaaacagccagagaccttcatccttgggcttg
atgtcacattcaagctgtgaaaacaacctggatactcaagacacctctgaagaccatgag
atcaccaaaaccatttcacaaaatgaggatgaaaattgtttcgaagcttcctctgtgaag
tgcttgaagggtgatgcagaagaggttgaaagcagcagagttgggagtgtcatgtccagg
tcatccctgcagtccaggcagagcaagaagaatgggtgtgaggaaacgagcagtgtgggc
aggagcatgtcctcctcaagccttcagaaggcaaatcagggagacaacacccagtgctcc
agccctgccaacagcgtgcacagcaagtccagtaacggcatcatgccaaaagaaaagagt
gagcagggtgacccctctgatgaaaacccagtggtgtcctccttctccagtgagtccttc
cccaagaaagaggctgaagaggtggaagcagagcaggaagaaagtgaagtcaatgaagcc
agctcagtgtcagcaaaaacaaagccaagccaatcaatcaggggtgagagcagtgaaggg
gaacgatgttctacgcaaggaacccaccgttccagggctagtgacaggaacagtaagaaa
agtggcagtgatgagaacgttccatgcagtgtctcttgctcttccagagggtccaaaaag
agcaaacacagccatgttcatttggatgcacagtctgaaatatctgtgtcttcacttgag
tccactctgaataaaaagaagcattccctacatgcagatgatgggagatcaggcagcaga
gcttcagttttttccaaaagctcgtgtgaaaccaagaaaaaatctgttggagatgccacg
tctcataagtcaggatctcttcactcaaacatttcatctaccagtgaagcagaggcaact
ggaggtcctgctgaagagaaaagttcaaaaagtactgccgatggctgcagtgaatcctca
aaaagctcaaagaagagaagccataaagaagaaagcaacaggccatcatccctctgctca
agttcttcaagtcctaatggaaaagctggagagggtcatgccaagattagttcagaactc
tcttcttcaaaacagggaagcatgagtgggagtgtatgttcaaaagttgaccacccagct
gaggatgggattaggaatggaaatcctacaagtagctcctcaagagtctcttcaaagtca
gaaataaaagataaatgcgtgtcgacacagatatcccaggaaactgatgataggtgttca
caatcaaacatgtctctatcttcaaaatcaaggcggacaaacaagaacaatcttcatgtg
aaggtaaactccagccgggcatcggtgtcggagactatgtcagtgtgtagtctgcactgc
cctgctccaccaaaagggaagccaaagagaaaaaatatgcgttcaatcatgttgaagaac
tcctccatcagtagcatcggcaccgaatccatgctgactgcaggaaaagggcagaaagaa
attctggattcctccaaagcaacttcctactactctaaatctgctgcaactgaagtaaat
ggtcagaataataaagagactgatgattcttgtaacaaaaaagcagagggagagatagaa
gacacaggcattcaggaggaagggggtgatttaatgccatcagctctaccaaatgcatct
ccagaagaagttgtgcaagaatggctcaggaaaatcccttcagaaacattgcttatgaaa
tatgaaatggaagatgatggggaagaggaaggtgcagagtcgaccactgaggtatcacac
tgtacaaatgctgaggaagccccagaggaggaaaaagctgaggaaaagcatgaggaggag
gaggctgaaaaggatgaagcaaatgatgaagcaaaggatgaagcaaaggctgacatggaa
gaagagaaagcagaagacacagctattaatgaagaggctgaagaatgtgtgaaccaggaa
gaaatctctgaggctgcacctgaagctgccaaagctgagcaggcagaatgcaagcagtca
gttacatccagccaaaataacaacaagagagacctgccatcctctgtccagacatctgtc
cagatcatgaaggccttgctcagttcaaaacacgagaccaaatttgaccgatcaaacagt
ttgcccgaagtgtcccccacaatggggagaaaactgagtaattccgccaacattttgatt
acttgtcttgccagcctccaactccttgatgaagagtcagaggatccatcagaaaactca
aaacttttgaataagtcaaggtacacagagctgctaaatatttttcaagccctgtggttt
gggtgcactgctgaaaggagcagcccaagttcaggccaagaggcaagcgagcaggcaaag
ccagtgtctgcatctaaagccccgaaatccatggatcatgccttcactcccatgtcctcc
tctggggttgatgtttgcagtggctctagtggctcaggagaagagtgcacagctggtgct
gtgttggtggcacagaaaaccgtggaattcaaaccagctgagcaagtagaaaattcagag
attggcacagaactgactgaggttgaggagaaaagtaaagaggaagagcagccatcccgc
ccttccacagcctgctcagaggcaaaagttgaggaaaaagcagagtctgctagagaggag
tctctaatccagaaggaagaagagaataaggaggatcagggcagtaactgtgagcagggt
cagaggaagggggagaaaatgaaaatgaagaagaaaaaattagctgaaactggagaactg
gaagaagctgaagctgtgaatgatgaagtcccacaagaaaaccctgaagaagctgatcag
ccagcgaccactgatgatgccaatgtcggtgatgctaatggtgggacggagctgaaagat
gagttggaagggcagccccaagaagagtcgccaaatgaccctgagcccaaagtcgataca
tccaccagtgtgaccaaatcccttgtccagcaaaactctgtggatccagacccaacttgg
gtcttgagactgctcaagaaaattgagaaggagttcatggctcactatgtcaatgccatg
aatgagttaaaagtcaggtggaacctgcaagacaaccagcagatggatgaaatgatactg
gagctgaaggaggacgtgggtaaaaggatacaaaagagcatagagaaggagctgaggaag
atcagaagtagggctggaaggagaatgccgagacctccagaggagccacccacacatgag
tccaaactccaaactgagcagaggagatggcgactgcaaactatgcataaaaagtccctc
tttggggacaagaatggcacccagacgaggctggaggagacgtcagacttatcattcaac
gtagataaagattttgaccttagtgcagctttggaggacagcattagcaaacaatccagt
gaggaggaatattgtccgtgtgactcctgtgtgaggaaaaaattggcttccagacctgcc
agagcccctgtggtggccaccaatgctccggtcatgaaagcctttgatttgaagcaaatc
ctgaggctgaaaaaagatgacaataaggaagccatcattgcagaagaagcccaggacacc
aaaacacttcccaatggttctgtggaggaaggggcagaaaatgaggagaaggatgagggg
gaacctcaggcaggtgaaacagaagcagaggaggatgaaggaaaagaaccagaattaaat
gaaggtgacagcacaatgttgaatggagatggagaagaacctgaagtagcagagagtcaa
aatgctgaggtggaggatgaggccaaaaatgaagaaaccaaagaagaagaagcagaagaa
ggaggggaagaaacaaaagaaggggaagaagaggaagcaaaagagcaggaagctgaagaa
aagtccaaaggtgaagatgaaggtgaaaatgaagctcaagaaacagaggagccagaggat
gaggatgttgtggctgatgatgaggcagagacatcagaatgcagaggagatactgagggc
tctggaactgacaacaatcctgaaggagatgctgcggaaggaaatgaagaagctgagaaa
gatgaagttgaggcagcagaagatgcaaaaccagagtcaggagatgaggctgaggagaaa
aacagtgaaggaggtgagaaacctgatgggaatgatgaggaacctaccggtgatgaccct
gacaaggcacatgaaaaacacaaagaccaaggcaacaacaaaatttccgagaaagcatca
aaaaccaaaggcaagaaaaccagcaaaaggttagagactctgaaaaaatccacagccttt
tcttgttattcttctgttggaaacttctcacagcaatcccagaaggggtctgatgatgaa
gaggaaggagtagttgaagaggaaggagtagttgaagaggaaggagtaattgaagaagaa
tgcaaaggtgacaataaccccatgagtgaccaccccaatggagaggttcgaagtgatgag
agctccaaaccctcccagatgtatcctgacagtgaggaagaagaagaggacaaagaatct
tcaggttctgatcctgtggaagatgaggaacaggcagatgctgaaggtgcagatccaaag
gagactgaaaacactgaggaagttcaggcttctaaaaagaaagtcagctcggatgagatt
gaccaggatgacctggacttctag
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