Corvus cornix (hooded crow): 104697244
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Entry
104697244 CDS
T03546
Symbol
LRBA
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein isoform X1
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccw04131
]
104697244 (LRBA)
Membrane trafficking [BR:
ccw04131
]
Endosome - Lysosome transport
Others
Others
104697244 (LRBA)
Endosome - Golgi transport
104697244 (LRBA)
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
104697244 (LRBA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
WD40
Laminin_G_3
Neurobeachin
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
SUKH_6
Motif
Other DBs
NCBI-GeneID:
104697244
NCBI-ProteinID:
XP_039407293
LinkDB
All DBs
Position
4:12978604..13352947
Genome browser
AA seq
2886 aa
AA seq
DB search
MASEGKQVVQPTGDDGGGGAGKEGNAAEGGSVLQPLNPGVPIRGIKMKFAVLTGLVEVGE
VSNRDIVDTVFNLLVGGQFDLEMNFIIQEGEGITCMVDLLDKCDITCQAEVWSMFTAILK
KSIRNLQACTEVGLVEQVLKRIDRADNMIADLLVDMLGVLASYNLTVRELKLFFSKLQGE
KGRWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIAKWPYQNGFTFHTWLRM
DPVNNINVDKDKPYLYCFRTNKGLGYSAHFVGGCLIVTSIKSKGKGFQHCVKFDFKPQKW
YMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCG
QMTSVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLDEHHKLLLYDGKLSSAIAF
MYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSALHSIGGVQVLFPL
FAQLDYRQYSSDHIDTTVCSTLLAFIMELLKNSIAMQEQMLSCKGFLVIGYSLEKSSKAH
ISRAVLELCLAFSKYLSNLHNGVPLLKQLCDHVLLNPAIWIHIPAQVQLTLYTYLSTEFI
ATVNIYGAIRRVGTVLLVMHTLKYYYWVVNPQDRSGITPKGIDGPRPTQKEILSLRAFLL
MFIKQLVMKDYGIKEDELQAILNYLLTIHEDDNLMDVLQLLVALMSEHPGSMIPAFDQRN
GLQVVYKLLASQSEGIRVQALKVMGYFLKHLAPKRKAEVMLGHGLFSLLAERLMLQTSLF
TMTTYNVLFEILTEQICTQVIHKQHPDPDSTVKIQNPQILKVIAVLIRNSPQCPETLEIR
RAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCCFNPKTSEEQKITEMVYTIFRILLY
HAIKYEWGGWRVWVDTLSITHSKVTFEMHKESLSQMYKEYQGKGGEGSGVHSLTPIRTIS
GISKETETKGKQQSLELKEDAPAPSCVTDGDTECRTEKKETENSSDGGQQTHSGSNHKEQ
SEGEDRDTTQDLKAVSCVEFSPEPETVKPSVSEISSGIAEAIEDSSKADELVEETVAVAA
ASLAMQTPVERETRTSPEKLEKSAVEVEDEDDFVDLKDESSLPLPSEEFAERNKECGSNE
SKVTKQEETTEKQPESVRLKSEDTEGVDKKKQELTLPETVSSAIPEAGTQSDSAGKKKLK
EGNIVSSETRMTVENANARVAEPAGASDKRIAKLDVSSVASDTERLELKANTCLEAPLPP
RSIPERYLLMDALHSAPFFLKGGKPLSTATYSPPVPSRQQVSSGQELAAPSDGQRRDTRS
TVFRIPEFKWSLMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVVFVHNTIHLI
SQVMDNMIMACGGILPLLSAATSATHELENIEPTQGLSVEASLTFLQRLINLVDVLIFAS
SLGFTEIESEKNMSSGGILRQCLRLVCAVAVRNCLECQQHAQMKPIGDTGKNQKAVQGFI
GSGKSAAKSPVDIVTGGISPIRDHDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYF
ISVLMVSKYRDILEPPNERRPPNQSQSLKESENESNETPAAVMENPSAAFGASASTEDSE
GTASLQRRDSGLGEEAAPAQTNRSGSAAEAGPLSVSAGPDAVSEVLCTLSLEVNKSQEGG
SETGTEESKSVASVPAAKNVNVKDILRSLVSTPADGTAVDAALLPPTFLGVLGNGAAEQP
VQFHSFDRSVVVPTKKSNISSTAAIGVPTNAVSVVSSLDSAQEPDLSGESPGRGSSNSKL
PSVPTVSSVPEDSASNMSITDRLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIE
GTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKEHLVRVAN
EAEFILSRQRAEDINRHAEFESLCAQYSADKREEEKMCHHLITAAKYRDQVTATQLIQKI
VNILTDKHGAWGSSAPSRPREFWRLDYWEDDLRRRRRFVRNPLGSTHPEATLRAAGEHAP
DEDILVKGKQSIKSQVLGNQNSESEILLEGDDDIMSFMEEREVENLTGPVALSTPAQLVA
PSVVVKGTLSITVSELYFEVDEEDPSFKKIDPKILAYTEGLHGKWLFSEIRSIFSRRYLL
QNTALEIFMANRVGVMFNFPDQATVKKVVNCLPRVGIGTIFGLPQTRRISLASPRQIFKA
SNMTQRWQHREISNFEYLMFLNTIAGRTYNDLNQYPIFPWVITNYESEELDLTLPSNFRD
LSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFALTWLLRIEPFTTLFLNL
QGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEIFVNSNNYNLGVMDDGTVV
SDVELPPWAKTPEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRSLNVFYYLT
YEGAVNLSSITDSVLREAVEAQIRSFGQTPSQLLIEPHPPRSSAMQVYLLLQSPLMFTEQ
AQQDVIMVLKFPSNSPVTHVAANTQPGLATPAVITVTANRLFAVNKWHSLPAHQGAVQDQ
PYQLPVEIDPLIASNTGMHRRQITDLLDQSIQVHSQCFVITSDNRYILVCGFWDKSFRVY
STDSGKLMQVVFGHWDVVTCVARSESYIGGNCYILSGSRDATLLLWYWNGKTNIIGDNPR
GDFATPRAVLTGHDYEITCAAICAELGLVISGSKEGPCLIHSMNGDLLRTLEGPERLQGP
ESCLRPKLIQASREGHCVIYYENGLFCVFSVNGRLQATMETDDKIRAIQLSRDGQYLLTG
GDNGVVMVWQVWDLKQLFAYPGCDAGIRSMALSYDQRCIMTGMASGSIVVFYNDFNRWHH
EYQTRY
NT seq
8661 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgaaggcaaacaagttgttcagccaacaggtgatgatggaggaggaggagcg
ggaaaagaaggaaatgctgccgaagggggaagtgtgctgcagcctttgaatccaggagtc
cctatccgaggcatcaagatgaaattcgctgtgctgacaggactggtggaagttggtgaa
gtgtccaacagagacatagttgacactgtgtttaatctgctcgtcgggggccagtttgac
ttggaaatgaactttatcatccaagaaggagagggcatcacctgcatggtggacttactg
gataagtgtgacatcacctgccaggccgaggtttggagcatgtttacagcaatcctgaag
aaaagtatacggaatctccaggcctgcacagaagtggggctcgtggaacaagtgctcaag
aggattgatagagctgacaacatgattgcagatctcttagtggacatgctgggtgtgttg
gctagctataacctgacagttcgagagctgaagttattcttcagcaagctgcaaggagaa
aaagggagatggccaccacatgctggaaagttattgtctgtgttaaaacacatgcctcag
aagtatggacctgatgccttcttcaactttccaggaaaaagtgctgcagctattgcctta
cctcctatagccaagtggccataccagaatggatttactttccacacttggctaagaatg
gatcctgtaaataatattaatgtggataaggataagccttatttatattgttttcgaaca
aacaaaggacttggttattctgctcactttgttggaggctgcttgattgtaacgtccata
aaatcaaagggaaaaggtttccagcactgtgtgaaatttgatttcaagccacaaaagtgg
tacatggtgactatagtgcacatctataaccgctggaagaacagcgaactccggtgttac
gtgaacggggaactggcatcttatggggaaataacatggtttgtcaacaccagtgataca
tttgacaaatgtttcctgggttcttcagaaacagcagatgccaatcgagtgttttgtggg
cagatgacatctgtttacctttttagtgaggctctcaatgctgctcagatctttgccatt
tatcagcttggcctgggatataagggaacgttcaagttcaaggcagaaagtgatctcttc
ctcgatgaacatcacaaattgttgctatatgatggcaaactctccagtgctattgctttt
atgtacaatccaagggctacagatgcacagctgtgtctagagtcatcccctaaggataac
ccttctatttttgttcattcaccacatgccctcatgctgcaggatgtgaaagcggtctta
acgcactcaatccaaagtgccctgcactccattggaggagtgcaggtgcttttccctctc
tttgcacagttggattataggcaatattcctcagaccacattgacacaactgtttgttct
actttactggcattcatcatggagttgttgaagaactctattgctatgcaagagcagatg
ctttcctgtaaaggcttccttgtgataggatacagcctggaaaagtcttccaaagcccac
atttccagagctgtactagaactttgccttgccttctcgaaatacctgagcaacttacac
aatggggtgcccttgctgaagcagctgtgtgatcatgttctcctgaatcctgcaatatgg
attcatatcccagcacaggttcagctgaccctgtacacttacctgtctacggagttcatt
gccactgttaacatatatggagcaatccggcgggttgggacagtgcttttggtcatgcac
accctcaagtattattactgggtggtgaaccctcaggatcgcagtggaataactcccaag
ggcatagatggtccacgtcctactcaaaaagagattttatccctgcgagcatttttgttg
atgttcattaaacagcttgtgatgaaggactatggaataaaagaagatgaattgcaggct
atcctcaattacctgctcactattcatgaggatgacaatctaatggatgtcttgcagttg
ctggttgctctgatgtcggagcatcctggttctatgatccctgcatttgatcagaggaat
ggattacaggtggtctacaagcttttagcatcacaaagtgaaggcatcagggtgcaagct
ctgaaagtgatgggatatttcttaaagcatcttgctccaaagagaaaagctgaagtcatg
cttggacacggattgttctctttgttggctgagaggctgatgcttcagacaagcttattc
accatgaccacatacaatgtcctgtttgagattctgactgaacagatttgcactcaagta
atacataaacaacatcctgacccagattcaacagtgaagatacaaaatcctcagattttg
aaggttattgcagtcctgatccgtaattccccacagtgtccagaaactctggagattcgg
cgagccttcctctcggatatgattaaactttttaataacagcagagaaaacaggaggagt
ttgttgcagtgctctgtctggcaggagtggatgctttccctttgttgttttaatccaaag
acttctgaggagcagaagataactgagatggtgtacaccatatttcggattttgctgtac
catgcaataaaatatgagtggggtggctggcgtgtgtgggtggacacactgtcaatcaca
cattcaaaggtaacttttgaaatgcacaaagagagtctttctcaaatgtacaaggagtac
caagggaaaggaggtgaagggagtggagtacattctttgactccaattagaacaatctct
gggattagcaaagaaactgaaaccaagggaaagcaacaatctttggagttaaaagaagat
gctcctgctccttcctgcgttactgatggagatacagagtgcagaactgaaaaaaaagag
acagaaaactcatcagatggtggccaacaaactcattcagggtctaatcataaggagcaa
tcagagggggaggatagggatactacgcaggatttaaaagcagtgtcttgtgtggagttt
tctccagaaccagaaacagtgaagcccagtgtctcagaaatcagtagtggaatagctgaa
gcaattgaagattctagcaaagctgatgagcttgtggaagaaacagttgctgtcgctgct
gcttctttagccatgcaaactcctgtggaacgagaaactcgcacaagtccagaaaaactg
gaaaaatcagccgtagaggtggaagatgaagatgactttgttgatttgaaggatgaaagt
agtttgcctttaccttcagaagagtttgcagaaaggaacaaggaatgtggctctaatgaa
agcaaagtgacaaagcaggaagaaacaacagagaagcaacctgaatctgtgcgtttgaaa
tctgaggatactgaaggtgtggataagaagaaacaagaactgactttgccagagacagtg
agttctgccattccagaagcaggaactcagtcggattcagcaggaaaaaagaagctgaag
gaaggaaacatagtttctagtgaaaccagaatgactgtggaaaatgcaaatgcacgtgtg
gcagagcctgctggagcctctgacaaaagaattgccaagcttgatgtttctagtgttgca
tcagatacagaaagactggagctgaaagctaacacatgtctagaagcacctctgcccccc
agatccatacctgagagatacctcctaatggatgctcttcattctgcaccattcttcctt
aaaggaggaaaaccactgtcaacagcaacatattctccccctgtgccctcaaggcagcag
gtttcctcgggacaagagctggctgctccatcggatgggcagaggagagacacgaggtca
actgtgttccgtattcctgagttcaagtggtcactgatgcaccagcgcctgctcacagac
ctgctcttctccatagaaacagatattcagatgtggagaagccattctacaaaaactgtg
atggactttgtgaatagcagtgacaatgtggtgtttgtgcacaacacgatccacctcatc
tctcaagtgatggacaacatgatcatggcctgtggtggtatcttgccattgctttctgct
gccacatctgctactcatgaattggagaatattgagccaactcaaggactttcagtagaa
gcatctttaacatttctccagaggttaatcaaccttgtggatgtgttaatttttgcaagc
tctcttggtttcactgaaattgagtctgagaaaaatatgtcatctggaggaattctgcga
caatgtcttcgtctggtatgtgcagtagcagtaagaaattgcttggagtgtcagcagcat
gcacagatgaaacctattggtgacactgggaagaaccaaaaagcagtgcaaggctttata
ggatcaggaaagtctgcagcaaagagtccagtggacattgtgacaggtggcatttctcca
atacgggaccatgacagacttctgcaggatatggatattaatcgcctccgagcagtcgtg
ttcagagatatagaggatagtaaacaggctcagtttttggctttggctgttgtatatttt
atttctgtgctcatggtttcgaaatacagagatatactggaacccccgaatgaaagacga
ccaccaaaccaaagccagtcactcaaggaatcagaaaatgaaagtaatgagactcctgct
gcagttatggaaaacccatctgctgcttttggtgcttcagcctccactgaagattcagaa
ggtacagcatctctgcaaagaagggattctggtcttggggaggaagcagctccagcacaa
accaaccgttcaggaagtgctgctgaagcaggacctctgagtgtcagtgcaggcccagat
gcagtcagtgaagtcctgtgcacactctcgttagaagtcaataagtctcaggagggcgga
agtgagacaggaactgaagagagtaaatctgtggcttctgtgccagctgcaaaaaatgtc
aatgtgaaggacatcttgagaagcttggtgagcacaccagctgatgggactgccgtggat
gctgctcttctgccaccaaccttcctcggagttcttggcaacggagctgctgagcagcct
gtgcagttccattcctttgacaggagtgttgttgtaccaacgaagaaatcaaacatttcc
tctacagctgctattggtgttcctacaaacgctgtcagtgtggtttcttctttagattca
gcccaagaaccagatttgtcaggagaatctcctggaaggggatcatctaattcaaaattg
ccatctgttcctacagtttcttcagtgcctgaggattctgcctccaatatgagtattaca
gacaggcttgagcatgctttggaaaaagctgccccacttctgagagagatttttgtggat
tttgctccctttctttctcgaactcttttgggcagccatgggcaggagttgctgatagaa
ggtacaagtcttgtgtgcatgaaatcgagcagttcagttgtggagctggtgatgctcctt
tgctctcaggagtggcaaaactctatacagaagaatgctggccttgcctttattgagctt
gtcaatgaaggaaggttgctgagtcaaaccatgaaggagcatctggtacgagtggctaat
gaagcagaatttatcctgagcagacagagggcagaggatattaaccgccatgctgaattt
gagtcactgtgtgcccagtactctgcagacaaacgggaagaagaaaaaatgtgtcatcat
ttgatcacagcagcgaagtaccgggaccaggtgactgcaacacaactaatacagaaaatt
gtcaacatcctgacagacaagcatggagcctggggaagctctgcaccaagtcgtcctcgt
gagttctggcgcctcgactactgggaagatgacttgcggcgccggcgacgatttgtgcgt
aacccccttggatcgacacatcctgaagcgacactcagggcagccggagagcatgctcct
gatgaggatatacttgtcaaaggaaagcagtccatcaagagtcaagttttaggaaaccag
aactcagaaagcgagattctcttggaaggggatgacgatatcatgtcattcatggaggaa
agagaagtggagaacttgacaggtccggtggccctcagcacaccagctcagcttgtggca
ccctcagtagtagtgaaaggcactctttccatcactgtttctgagctctactttgaggtg
gatgaagaagatcctagttttaagaaaatcgacccaaagattctggcatatacagaaggg
ctccatggaaaatggctcttctcagagattcgatctattttttcccgacgttaccttttg
caaaatacagcactggagatattcatggcaaatagagtgggagtcatgttcaacttccct
gaccaagcaacagtgaagaaagtggttaactgtctacctcgggttggtattggtaccatc
tttggactaccccagaccagacgcatttctttggctagtccacgacagatcttcaaagct
tccaatatgacccagcgatggcagcaccgagagatttccaactttgaatacctgatgttt
ctaaacactatagcaggtcgaacttacaatgatttgaatcagtaccccatcttcccttgg
gttatcaccaactatgaatcagaggagttggaccttacacttcctagcaacttcagggat
ttgtcaaagcccattggagctttgaacccaaagagagcagcgttctttgctgagagatat
gagtcgtgggaagacgatcaggtcccaaaatttcactacggcacccattattcaacagca
agttttgcactcacgtggttgttaaggattgagcccttcacaacactcttcctaaatcta
caaggtgggaagtttgatcatgcagataggactttttcgtctatttcaagagcgtggcgc
aacagtcagcgtgacacttctgacatcaaggaattgattcctgagttttattacctccca
gagatatttgtcaacagcaacaattacaatctgggagtgatggatgatggaacagtggtg
tctgatgttgaacttccaccgtgggccaaaaccccagaagaatttgttcgcataaacagg
ctggcgttggaaagtgagtttgtttcctgccagcttcaccagtggattgatctgattttt
ggctacaaacaacaagggccagaggctgttaggtccctcaatgtattctactatttgact
tatgaaggagctgttaatttaagttcaataacggattctgtactgagagaggctgtggaa
gctcaaataagaagttttggacagaccccttcccaactactcatagaaccacatcctcca
cgaagttctgccatgcaggtgtatctcctcctgcagagccccttgatgttcacagagcaa
gcccagcaggacgttatcatggtcctgaagtttccatccaactccccggtcactcacgtg
gctgccaacacccaacccggcctggccactcctgctgtgatcacggtcactgcaaacagg
ctctttgctgtgaacaagtggcacagcctccctgctcatcaaggtgctgtacaagaccag
ccttaccagctgccagtggaaatcgatcctctcatagccagcaatacaggtatgcacaga
aggcaaatcactgaccttttagaccaaagcattcaggtacattcccagtgttttgtcatc
acctctgacaatcgttacatcttggtctgtggcttctgggacaagagtttccgtgtttat
tctactgattcaggtaaactgatgcaggtagtgtttggccactgggatgttgtaacctgt
gtggctcgttccgagtcctacattggagggaattgttacatcctctcaggatcccgggat
gcaaccttgctgctctggtactggaatggcaaaaccaacatcattggtgataacccaaga
ggtgattttgcaactcctcgagctgttctgacagggcatgactatgagatcacctgtgct
gccatttgtgctgagcttggcctggtaataagtggttcaaaagaaggaccatgtctcata
cattctatgaatggagatctactgaggacattagaaggtcctgaaagattacaaggtccc
gaaagctgcctgagaccaaaacttattcaagcttccagagaaggccactgtgtcatatat
tatgaaaacggcctcttctgtgtgttcagtgtgaatgggagactgcaagccactatggaa
acagatgacaagataagggccattcagctgagtcgggatggacagtatctgctcacaggt
ggagacaacggagttgtcatggtctggcaggtgtgggacctcaagcagctctttgcttac
ccaggctgtgatgctggaatccgatccatggccctgtcctatgaccaaaggtgtataatg
actggaatggcgtccgggagcatcgtggttttctacaatgatttcaatcgctggcaccac
gagtaccaaaccaggtactga
DBGET
integrated database retrieval system
