Corvus cornix (hooded crow): 104697960
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Entry
104697960 CDS
T03546
Symbol
DDB2
Name
(RefSeq) DNA damage-binding protein 2 isoform X1
KO
K10140
DNA damage-binding protein 2
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03420
Nucleotide excision repair
ccw04115
p53 signaling pathway
ccw04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104697960 (DDB2)
09124 Replication and repair
03420 Nucleotide excision repair
104697960 (DDB2)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
104697960 (DDB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccw04121
]
104697960 (DDB2)
03400 DNA repair and recombination proteins [BR:
ccw03400
]
104697960 (DDB2)
Ubiquitin system [BR:
ccw04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
104697960 (DDB2)
DNA repair and recombination proteins [BR:
ccw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
104697960 (DDB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_NUP159_NUP214
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
WD40_RFWD3
PEP5_VPS11_N
Frtz
Motif
Other DBs
NCBI-GeneID:
104697960
NCBI-ProteinID:
XP_039409063
LinkDB
All DBs
Position
5:39769318..39786013
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AA seq
490 aa
AA seq
DB search
MAGRQQPPLQVLGEVLVPPSVLGSDRMAPVNQPKDKKRERACQHWPEEAKSAGKRKRDYG
ERGNEKQEKRLFVRKTSKPSGKIAGCSGGGFVMRNKRVLSSQLERRCSIVHYVYQKMLGG
PIQAQLRQRLELAFLRSLSSYCLFRRASPFDRRVTCLEWHPTHPSTLAVGSKGGDIILWD
CEVLAKTCFIKGKGPGDSLGDIKFSPYEAEKLYVASGDGTLSLQDLEGRAVQVISRALDC
GHEHHNVCCWYCSVDVSASCHAVVTGDNVGNVVLLSTSGEEIWKLKLHRKKVTHVEFNSR
CEWMFATASVDQTVKIWDLRNIKNKTNFLHLLPHEKPVNAAYFSPTHGAKLLTTDQHNEI
RVYSSSDWTKPLHLIPHPHRQFQHLTPIKATWHPRYDLIVVGRYPDPKFPGYTPSELRTV
DVFDGNTGEMVCQLYDPNASGIISLNKFNPMGDTLASGMGFNILIWNQEEMAAKKHEHLL
KAMTDKEIEP
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggccggcagacagcagcctcctttgcaggtgctgggggaagtgctggtacctccctct
gtgttggggtcagacagaatggctccagtgaaccagccaaaggacaagaaacgtgagagg
gcatgtcagcattggccagaagaggcaaaatcagctgggaagaggaagcgggactatggg
gaacgagggaatgagaaacaagaaaagaggttgtttgtgagaaaaacatctaaaccatca
gggaaaatcgcaggttgcagtggaggtgggtttgtgatgagaaacaagagagtcctttcc
tctcagctggagcggcggtgcagcattgttcattatgtctaccagaaaatgctgggaggc
cccattcaggcacagctcaggcagaggctggaactggcttttctgcgttctctttcctca
tactgcctctttcgaagagcaagtccctttgacaggagagtgacatgcctggaatggcac
ccaacacaccccagtacactagctgtcggttccaaaggtggagacatcatcctttgggac
tgtgaagtacttgctaaaacctgcttcataaaggggaaagggccaggagattctctcgga
gacatcaagttcagtccttatgaggcagagaagctttatgtggcatcaggtgatggcacc
ctaagtctgcaggatcttgagggcagagcggtgcaggtgatctctcgtgccctggactgt
ggccatgagcatcataatgtttgttgctggtactgcagtgtggatgtttctgcaagctgc
catgcagtggtgacaggtgataatgtgggcaacgtggtcctgctcagcacttctggtgaa
gagatctggaagctgaaattgcacaggaagaaagtgactcatgtagagtttaactcccga
tgtgagtggatgtttgccacagcatctgtggatcagacagtcaaaatctgggacctcaga
aacatcaaaaacaaaacaaactttcttcatctgcttccacatgagaaacctgttaatgca
gcttacttcagcccaacacatggtgccaagcttttgaccacagaccagcacaatgaaatc
agggtttactcatcttcagactggaccaagccactgcatctgattccacatccacatagg
cagtttcagcacctcacacctattaaggcaacgtggcatcctcgctatgacctcattgtg
gtaggtcgctacccagaccccaagttccccgggtacacgccgagcgagctgcgaactgtg
gatgtgtttgatggaaacactggcgagatggtttgtcagctctacgatccaaatgcttct
ggcatcatctcgctcaataaatttaaccctatgggagacacactggcttctggcatgggc
tttaatattctgatctggaaccaagaggagatggcggccaagaagcatgaacatcttttg
aaagccatgacagacaaggagattgaaccatga
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