Corvus cornix (hooded crow): 104698068
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Entry
104698068 CDS
T03546
Symbol
NUP98
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup98-Nup96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03013
Nucleocytoplasmic transport
ccw05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104698068 (NUP98)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
104698068 (NUP98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccw03019
]
104698068 (NUP98)
03036 Chromosome and associated proteins [BR:
ccw03036
]
104698068 (NUP98)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
104698068 (NUP98)
Chromosome and associated proteins [BR:
ccw03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
104698068 (NUP98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
ZapB
Motif
Other DBs
NCBI-GeneID:
104698068
NCBI-ProteinID:
XP_039410050
LinkDB
All DBs
Position
1:117583734..117619795
Genome browser
AA seq
1793 aa
AA seq
DB search
MFNKSFGAPFGGSTGFGTTSTFGQNAGFGTTSGGAFGTSAFGSNSNTGGLFGSTQTKPGG
LFGSTTFNQPATSSTSTGFGFGTSTGTSNSLFGTTSTGLFSSQNNAFAQNKPAGFGNFGT
STSSGGLFGTTNTTSNPFGSTSGSLFGPTSFTAAPTGTTIKFNPPTGTDTMVKSGVSTNI
NTKHQCITAMKEYESKSLEELRLEDYQANRKGPTNPVGAGATAGLFGSSTATSSTATGLF
GSSTTNTGFSYGQNKTAFGTSTTGFGTGTTGGLFGQQSQTTSLFNKPFGQATTTQNTGFS
FGGTSTLGQPNTNTMGLFGVTQPSQPGGLFGTAANTNAGTGFGTGTGLFGQANTGFGVGG
STLFGNKPAGFGATTTSAPSFGTTTGGGLFGFGANTAGNSLFGNKPATGTLGTGLGTGFG
TALGAGQTSLFGNTQPKLGGTLGTGAFGAPGFNTSTATLGFGAPQPAVALTDPNASAAQQ
AVLQQHLNSLTYSPFGDSPLFRNPMSDPKKKEERLKPTNPAAQKALTTPTHYKLTPRPAT
RVRPKALQSAGSAKSQLFDGLDDDEPSLSNGAFMPKKSIKKLVLKNLSSSNLFSPVSREN
EDLASPSEYPENGDRFFLSVPPEENHRQDGEQEEEEEAHEVTRFYTNPIAKPIPQTLEGS
GHKPHSSVDDTIVALNMRAALRNGLEGSSEDASFQEDSLQDEQDKEVEAVHQLHPAGIVL
TRAGYYTIPSLEELARLTNDRNECIVTDFTIGRKGYGSIYFEGEVNLTNLNLDEIVHIRR
KEVIVYPDDERKPPIGEGLNRRAEVTLDGVWPTDKTSRCLIKSPERLAEMNYEGRLEAVS
RKQGARFKEYRPETGSWVFKVAHFSKYGLQDSDEEEEDHPLKVDTKKLKTTPVPPPGHLP
PQQMALNGKPAPPAQPPELEQLGRVVELDSDMADITQEPAQEPLAEDALAEEQEAVPAST
HIASTQGINPYVLQIMKASLLADDDDLDLILDYPGKQPVKMDTSQEICSPRLPISKSQGQ
KRHTVAGLLQSKFANVLFQAPSAAVADAKGPRTLGSPPSAALWSAASPLASAFAVPPAVP
EVQVKAVGVRRQRGLVPLERSITYGKGKLLMDMGLFMGRSFRVGWGPNWTLVNCGDQLSG
SSEVEDAQLESVEYGFLPTPVAPKSLTESPFKVHVEKLSLEQWKMDRDKELYLTPLEIKL
KHSTVHMDEPCPLLAPNPGVSAIHDYADWARKASEDPTVAETVVKHWCLAWTLCEAIWGN
LKELEASLEEPSEYVLALERRRAFSRWLSETAAGRIEDEVSLSRHGSHVEAVFSCLTGKR
IGEACRLAQQAGDHRLALLLSQLAGSQPVRDLLTLQLVDWHRLHSDRFIQEERLRLFALL
AGKPVWRLSERISINVCSLLDWKRCVAVHLWYLLPPTASISKALAMYESAFQNTSECEKY
ACCPLPPYLEDSGCVIEEDDNAGRPLRDVCFHLLKLYSDRSYELDQLLDPRSVTSDPLDF
RLSWHLWEVLRALNYSHLSQQSWGVLNTSYAAQLESEGLWEWAVFVMLHEPDTHIREKAV
RELLSRHCALADTPESWAKETFLTQRLCVPPHWIHEAKAVRARMEGDKHKEALFLFKAGH
WNQCHKLVVRHLASDAIINENYKYLKGFLEDLAPPERSALIQDWELAGLVYLDYIRVNEM
LDRIQQLDCSTYELERLHTKVTSLCNRIEQLQCHNAKDRLAQSDMAKRVANVLRVVLSLQ
QGPEPGPEPAEPRVPLRLLAPHIGRLPMPEDYALEELRGLTQAYLRELALAAH
NT seq
5382 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacaaatcctttggagctccgttcggaggcagcactggctttgggacgacttca
acctttgggcaaaatgccggctttggtaccaccagcggaggggccttcggaacatcggcc
ttcggctccaacagcaacaccgggggcctcttcgggagcacgcagacaaagccaggaggg
ttgtttgggtcaaccacattcaaccaaccagccacctcctccaccagcactggctttggg
tttggaacatccactgggacatcaaacagcctcttcggaaccaccagcactggcctcttc
tcatcccagaacaatgcctttgcacagaacaagccagctggctttggaaactttggtacg
agcaccagcagcggagggctctttggcaccaccaacaccacttccaacccctttgggagc
acatctggttctctctttggcccaaccagctttactgctgctccaactggcacaactatt
aaatttaatcccccaaccggcaccgacaccatggtgaaatccggcgtcagcaccaacatc
aacaccaagcaccagtgcatcactgccatgaaggagtacgagagcaagtccctcgaggaa
ctccgtttggaagactaccaggcaaataggaaaggacccacgaatcctgtaggagcagga
gcaactgctggcttgtttggctcttccactgccacgtccagcacagccacgggacttttt
ggctcttccactaccaatacaggcttttcatatggacagaataaaactgcttttggaacc
agtacgaccggctttggcaccggcaccacgggcgggctctttgggcagcagtcccagacc
acgagtctgttcaacaaacccttcggccaggccaccaccacgcagaacaccggcttctcc
ttcgggggcaccagcaccctgggccagcccaacaccaacaccatgggtctctttggggtc
acccagccctctcagcctggaggcctttttgggacagctgccaatacaaatgctgggact
ggatttggaacgggaactggcctttttggacaagccaacacaggatttggtgttggtggt
tcgaccctgtttgggaacaagcctgctggatttggagccaccacaaccagcgctccctcg
ttcggtaccaccacgggcggtggcctcttcggttttggtgccaacactgctggaaatagc
ttgtttggaaataagcctgcgactgggactctgggaactggacttgggacagggtttgga
acagctctgggggcaggacagacgtccttgttcgggaacacccagccaaagctgggggga
acgctgggaacgggagcattcggagccccaggattcaacacctccacagctaccctgggc
tttggggcccctcagcctgctgtagctctgacagaccccaatgcctctgcagcccagcaa
gctgtcctccagcagcacctcaacagcctgacctactcaccctttggagactccccactc
ttcagaaaccccatgtcagacccaaagaagaaagaagagaggctgaagccaaccaaccca
gcagcccagaaggccttgacaacccccacccactacaagctgaccccacgccccgcgacc
agagtgcggcccaaggccctgcagtcggcgggctcggccaagtcccagctcttcgatggg
ctggatgatgatgagccctccctgtccaatggagccttcatgccaaagaagagcatcaag
aagctggttctgaagaacctcagcagcagcaacctgttctctcccgtgagccgagagaac
gaggacctggcgtcgccgtcggagtaccctgagaatggggacaggttcttcctgtcggtg
cctcccgaggagaaccacaggcaggacggggagcaggaggaggaggaggaggcccacgag
gtgaccaggttttacaccaatcccattgccaagcccatcccccagaccctggagggcagc
gggcacaagccccactcgagcgtggacgacaccatcgtggcgctgaacatgcgcgcggcc
ctgcgcaatgggctggagggcagcagcgaggacgcctccttccaggaggattccctgcag
gatgagcaggacaaggaggtggaggccgtgcaccagctgcatcctgcagggattgttctg
acacgagctgggtactacaccatcccctccctggaggagctggcccggctgaccaacgac
aggaacgaatgtattgtgacagacttcaccatcggccgcaagggttatggatcgatttac
tttgaaggagaagtaaatctaacaaacttaaacctggatgagatcgtacacatccggaga
aaagaagttattgtttaccctgacgacgaaagaaaaccacccattggggaagggttaaac
aggcgagctgaggtcaccctggacggggtgtggcccacggacaaaacgtcgcggtgcctg
atcaagagccccgagcgcctggccgagatgaactacgagggccggctggaggccgtgtcc
cgcaagcagggcgcccgcttcaaggagtaccgcccggagaccggctcctgggtcttcaag
gtagcacacttttccaagtatggcttgcaagattcagatgaggaagaggaagatcatcct
ttaaaagtggacaccaagaagttaaagaccacacctgtgccacccccagggcacctgcct
ccccagcagatggccctgaacggcaaaccagcgcccccagctcagcccccggagctggag
cagctgggcagggtggtggagctggacagtgacatggccgacatcacccaggagccagcc
caggagcccttggcagaggacgccctggcagaggagcaggaggcagtgccggcatccacc
cacatcgcatccacccagggcatcaacccctacgtcctgcagatcatgaaagcttccttg
cttgctgatgatgacgacctggatttgatcctggattatcctgggaagcagcctgtcaag
atggacacttcccaagagatctgctccccgaggcttcccatttcaaaatcacaaggacag
aaaagacacacagttgctgggctgctgcaatccaagtttgccaatgtccttttccaagca
ccgagtgctgctgtggcagatgccaagggcccgaggactttgggcagccccccctctgct
gccctgtggtcggcggcgtccccgctggcctcggcgttcgccgtgccccccgcagtgccc
gaggtgcaggtgaaggcagtcggggtccgcaggcagcgcgggctcgtccctctggagagg
tccatcacctatggaaaagggaagctcctgatggatatgggactcttcatggggcgctcg
ttccgtgttggttggggacccaactggacactggtcaattgtggagatcagttgagtggc
tcgagtgaagtggaagatgctcagctggagtccgtggaatatggattcctgccgactccc
gtggctcccaaatcactcacagaatcccctttcaaggttcatgtggaaaagttgagcttg
gagcaatggaagatggacagagacaaggagctgtatctcacccctctggagataaagctg
aagcacagcactgtccatatggatgagccctgtcccctcctggcccccaatcctggggtc
tctgctatccatgactatgctgactgggccaggaaagcatctgaggatcccactgtggca
gagaccgttgtgaagcactggtgcttggcctggacgttatgtgaagctatttggggcaac
ctgaaggagctggaggccagcctggaggagcccagtgagtatgtgctggccctggagcgc
cgcagggccttctcgcgctggctttcggagacggcggccgggcgcatcgaggacgaggtg
tccctgtcccggcacggcagccacgtcgaggccgtgttcagctgcctcaccgggaagaga
atcggcgaggcctgcaggctggcacagcaggcaggtgaccaccgcctggccctgctgctg
tcacagctggccgggagccagcctgtgcgggacctgctgaccctgcagctcgtggactgg
caccgcctgcacagcgaccgcttcatccaggaggagcggctgcgcctcttcgcgctgctg
gcggggaagccggtgtggcggctctccgagaggatcagcatcaatgtgtgctcgctgctg
gactggaagcgctgcgtggccgtgcacctctggtacctgctgccccccacggcatccatc
tccaaggccctggccatgtacgagtcggcctttcagaacacctcagagtgtgaaaaatac
gcctgctgtcctctgcctccttacctggaagattctgggtgtgtcattgaagaagatgac
aatgcaggaaggcccctgagagatgtctgcttccatttgttaaagctctacagtgacagg
tcctatgagcttgaccagctgctggatcccaggagtgtcacctctgacccgctggatttc
cgcctcagctggcacctgtgggaggtgctccgggccctgaactactcccacctgtcccag
cagagctggggggtgctgaacaccagctatgctgcccagctggagagcgaggggctgtgg
gaatgggccgtgttcgtgatgctgcacgagcctgacacgcacatccgggagaaggccgtg
cgggagctgctgagccggcactgcgccctcgccgacacccccgagtcctgggccaaggag
accttcctgacacagaggctctgcgtcccccctcactggattcacgaggccaaggcagtt
cgggcaaggatggagggtgacaagcacaaagaggcccttttcctgttcaaggctgggcac
tggaaccagtgccacaagctggttgtcaggcacttagcctcagatgcaattatcaacgag
aactacaagtacctgaaaggattcctggaagacctcgcgcctccagagcgcagcgcgctc
atccaggactgggagctggcggggctggtctacctcgactacatccgtgtgaatgagatg
ctggacaggattcagcagctggattgttccacctacgagctggagcggttacacaccaaa
gtgacgtccctgtgcaacaggatagagcagctgcagtgccacaacgccaaggaccgcctg
gctcagtcggacatggcgaagcgcgtggccaacgtgctgcgggtggtgctgagcctgcag
cagggcccggagccgggcccggagccggcggagccgcgcgtgcccctgcggctgctggcc
ccgcacatcggccgcctgcccatgcccgaggactacgcgctggaggagctgcgcggcctc
acccaggcctacctgcgggagctggccctggccgcgcactga
DBGET
integrated database retrieval system
