Corvus cornix (hooded crow): 104698287
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Entry
104698287 CDS
T03546
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03018
RNA degradation
ccw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104698287 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
104698287 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccw03019
]
104698287 (LSM8)
03041 Spliceosome [BR:
ccw03041
]
104698287 (LSM8)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104698287 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
104698287 (LSM8)
Spliceosome [BR:
ccw03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
104698287 (LSM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
104698287
NCBI-ProteinID:
XP_039427363
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All DBs
Position
1A:complement(23519835..23526820)
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AA seq
109 aa
AA seq
DB search
MNVSENVNGSISDVTKYFLNEISGTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFS
SSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVH
NT seq
330 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtttcagaaaatgttaatggttctatttcagatgtgactaaatatttccttaat
gaaatatcaggtactgttgcagtgattacttctgatggaagaatgattgtgggaacgctc
aaaggttttgatcagaccataaacttgattttggatgaaagccatgaaagagtgttcagt
tcttcacaaggagttgagcaagtagtgctgggcttatacattgtaagaggtgataacgtt
gctgtgattggtgaaattgatgaagagacagattcagctcttgacttggggaatattcga
gcggagcctttaaactcagttgtgcactga
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