Corvus cornix (hooded crow): 104698644
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Entry
104698644 CDS
T03546
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104698644 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccw03041
]
104698644 (DDX42)
Enzymes [BR:
ccw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104698644 (DDX42)
Spliceosome [BR:
ccw03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104698644 (DDX42)
Complex B
104698644 (DDX42)
Complex C
U2 SnRNP specific factors
104698644 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
104698644
NCBI-ProteinID:
XP_039420442
LinkDB
All DBs
Position
23:complement(4645033..4661363)
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AA seq
941 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPESPIAAMVAAKGVPGFTSTGNLSSVPT
FPSVGAQGFNNTNTSTNSREGGGGVGGVVRERYNDNRPSRHGEAPRRGEGGGRAEGGGRY
NDVQRYNDVQRHGEGGGRHSDPSRHGDGRHGDVHRHSEGRHFTDFPGGGNRNNGDSRNST
EGRNSESRNGENRKDANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggcggacctggtacgaagagaggcttcgggtttggtggatttgcc
ataacacctgggaagaaagaggagcccaagctgtctcagcagtcccacagtgcttttggc
acagccggctcctcggcagcgttcgcaaaatcggggcctcctcagctgccttccttctac
aaaatcgggtcaaagagagcaaattttgatgaggagaatgcgtactttgaggatgaagag
gaagattccagcaatgtggaattgccctacattcccgcagagaattcccccactcggcag
cagttccattccaaatctgcagactctgacagtgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagactcgaagataaagacaaagaa
aaaaagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcatat
tttcgctacatggctgagaaccccactgctggtgtggtgcaagaggaggaagaggataac
ctggagtacgatagtgatgggaatccgattgcaccgtccaaaaaaatcattgatcctctt
ccacctattgaccattcagagattgaatacccaccatttgagaaaaatttctacgatgag
cacgaggagatcaccagcttgaccccgcagcaagtggtggagttacggcacaagctgaat
ctccgggtctccggggctgctcctccaaggcctggcagtagttttgctcattttgggttt
gatgagcaacttatgcatcagattaggaaatctgagtatacccaacccactccaatacag
tgtcagggtgttccagtggccctaagtggcagagacatgattgggattgctaagactgga
agtgggaaaacagccgccttcatctggccaatgctgatccacatcatggatcagaaggag
cttgaaccaggggatggtcccattgcagtgatcgtctgcccgaccagggagctctgccag
cagatccactccgagtgcaagcgctttggcaaggcgtataacctgcgctccgtggctgtg
tatggaggagggagcatgtgggagcaagccaaggccctgcaggagggggcagagatcgtg
gtctgcactccaggtcgtttgattgatcatgtgaaaaagaaagctacgaaccttcagaga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatggggtttgagtatcag
gtcagatcaattgcaagccacgtacgtcctgacagacagaccctcttgttcagtgccacg
ttccgtaagaagattgagaaattggcccgggatattctgattgacccaattcgggttgtg
caaggagacattggagaggcaaatgaagatgtcactcagattgtggagatcttcccctct
gggcccagcaagtggaactggctgacacggcgcctcgtggagttcacgtcctccgggagc
gtcctcctctttgtcaccaagaaagccaacgcagaggaactggccaataacctcaagcag
gaggatcataacctggggctgcttcatggggacatggaccagagtgagagaaataaagtc
atttcggagttcaagaaaaagggcatccccatactggtagctactgatgtggcagctcga
gggttggatatcccttccatcaagactgtcatcaactatgacgtggctcgggacatagac
acccacacccaccggatcggccgcaccggccgcgcgggggagaagggcgtcgcttacact
ctgctgacccccaaggacagcaacttcgctggtgacctcgtcagaaacctggagggtgcc
aaccaacacgtctccaaagagctgctggatctggcaatgcagaatccgtggttccggaaa
tcccgttttaaaggagggaaaggcaagaagctgaatattggtggtggaggcttgggatac
cgcgaacgccccgggctgggctcagaaaataccgaccgtggaaacaacaacagtgtgatg
agcaactacgaggcctacaagccatccacgggggccatgggggacaggctgacagcaatg
aaagcagctttccagtcccagtacaagagtcactttgttgctgcaagtttaaataaccaa
aagactgggagctctgctgctggtgccagcggctggaccagcgctgggagcctgaactcc
gtcccgacgagttcagcgcagcaaaacgctgccaaccccgagagccccatcgcggccatg
gtggcagcaaagggtgtcccgggcttcaccagcaccggcaatctgagcagcgttcccacc
ttcccgagtgtcggagcacagggcttcaacaacacaaacaccagcaccaacagtcgagaa
ggcggcggcggcgttggtggcgttgtcagagaacggtacaacgacaaccggcccagtcgc
cacggcgaggccccgcggcgtggggagggcggtggccgcgcagagggtggcggccgctac
aacgacgtccagcgctacaacgacgtccaacgccacggtgaaggtggcggccgccacagt
gacccctcccggcacggtgacggccgccacggggacgtccatcgccacagcgagggccgg
cacttcaccgacttcccgggcggtgggaaccgcaacaacggcgacagcaggaacagcact
gaagggaggaacagcgagagcaggaatggagagaacaggaaggatgccaacagccgggac
aacaagacagatggttttgctgtcccagagcccccaaaacggaagaagagccggtgggac
agttaa
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