Corvus cornix (hooded crow): 120410754
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Entry
120410754 CDS
T03546
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin beta-15-like
KO
K16494
protocadherin beta
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ccw04515
]
120410754
Cell adhesion molecules [BR:
ccw04515
]
Cadherins
Protocadherins
120410754
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
RET_CLD1
Motif
Other DBs
NCBI-GeneID:
120410754
NCBI-ProteinID:
XP_039415791
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Position
13:complement(13993962..13996165)
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AA seq
645 aa
AA seq
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MAIARQVLCLCAFLSVPXARAEPIRYSVAEEAESGSLVGKLAEDAGLTPEQLSARRARLV
SEDGRQHFRLDRASGRLVVAGRLDREELCGHSGTCMLPFELLLANPLQFFRVEVALEDIN
DHSPVFPDERVNFKIPETSDPGSRFPLEGARDLDIGSNNIQTYSISPENGYFSVSFGSRS
EDDKYIELVLEKPLDREEQAEMGFSLIAVDGGSPPRSGTTQVKIVILDVNDNAPIFTQEE
YIGQVLENMPEGSVVLSVLATDQDAGVNGDISYQLRQAVGQSNSAFVIDPITGEIKLTKP
LDFEDSEHHEFRVRATDGGGLSAICKVLVEVVDVNDNAPELVVSSFSSPLPENTAPGTVV
ALFTVRDRDSGANGKISCALEDQLFFSLRPAYKNYYEVVTVSALDREETAQYILTVTAAD
AGSPPLTTTQTFTVDISDVNDNAPVFNQTSYTMYVRENNVPTVFVGAVSAADADVGLNAK
VTYSLAPVEPAERPSCSCISVNSENGHVFVLRPLDYEQLRQSEVTVSASDAGSPPLRANV
TLRLVVLDENDNAPLVLYPAQDSSPPSSELVPVSAEAGYLVTKVVAVDADSGQNSWLSYH
LLRASDPGLFTVSAQSGEVRLRRPVTERDTVKQKLVVLVRDNGKP
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcgcaaggcaagtgctttgtctgtgtgctttcctgtccgtgccgnccgctcgc
gccgagcccatccgctactccgtagccgaggaggcggaaagcggctccctggttggcaag
ctggcggaggacgcggggctcacgccggagcagctctcggctcgccgcgcccgcctggtc
tcggaggacgggcggcagcattttcgcttagaccgcgcctccggccgcctcgtcgtggcg
gggaggctggaccgggaggagctgtgcggccactccggcacctgcatgctccccttcgag
ctgctgctcgccaaccccctgcagttctttcgggtggaggtggctctggaagacatcaat
gaccattcacccgttttcccagacgaacgagttaattttaagatccccgaaacaagtgac
ccgggttcgcgtttccctctggagggtgctcgggatctcgatattggcagcaataatatc
cagacatacagcatctctcccgagaacgggtactttagtgtctcctttggcagtcggagt
gaagatgacaaatatattgaactggtcttggaaaagccactagacagagaggaacaggca
gagatgggtttcagtctcattgctgtagatgggggctctcctcccaggagtgggacaacc
caagtgaaaattgtcattctagatgtaaatgacaatgctcccatcttcacacaggaggag
tacatagggcaggtattagagaacatgccagaaggctctgtggttctgagtgtgctggca
acagatcaggatgctggagttaatggggacatttcctatcaactcagacaggcagtgggc
cagagcaactcagcgtttgtgattgatcccataaccggtgaaattaaactcacaaaacct
ctggacttcgaggattcagagcatcatgaattccgtgtgagggccacagatggtgggggg
ctctcagcaatctgcaaagtgttggtggaggtggtggatgtgaatgacaatgccccagag
ctggtggtcagttccttcagcagtcccctccccgagaacacagcgcccggcacggtggtt
gccctctttacggtcagggaccgggattctggtgccaacgggaagatctcctgtgccctc
gaggatcagctcttcttctccctgcggccagcctataagaattactatgaggtggtgaca
gtgagcgcgctggaccgcgaggagacggctcagtacatcctgactgtcacagcagcagat
gcggggtcccctcccctcactaccacgcagaccttcactgtggacatctcggatgtgaat
gacaatgcccctgtgttcaaccagacgtcatacaccatgtatgtgcgtgagaacaacgtc
cccacggtgtttgttggagccgtcagtgctgcagatgctgacgtggggctcaatgccaag
gtgacctattccctggccccagtcgaaccggcagagcggccttcctgctcctgcatctct
gtgaactccgagaacggacacgtctttgtgctgcggcccctggactacgagcagttgagg
cagagcgaggtcacagtcagtgcctctgacgcggggtctcctcccctcagagccaacgtc
accctccgccttgtcgtgctggacgagaatgacaatgccccgctcgtgctctacccagcc
caggacagcagcccaccgtccagtgagctggtgcccgtgtcggctgaggcgggctacctc
gtcaccaaagtggtggccgtggatgccgactcgggacagaactcgtggctctcgtaccac
ctgctgagggccagcgaccccgggctgtttacggtgagtgcccaaagcggggaggtgcgt
ctgaggaggccggtgacagagagagacaccgtgaagcagaagctcgttgtcctggtgaga
gacaacgggaagccc
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