Corvus cornix (hooded crow): 120412271
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Entry
120412271 CDS
T03546
Symbol
TRIM28
Name
(RefSeq) LOW QUALITY PROTEIN: transcription intermediary factor 1-beta
KO
K08882
tripartite motif-containing protein 28 [EC:
2.3.2.27
]
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ccw01001
]
120412271 (TRIM28)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccw04121
]
120412271 (TRIM28)
Enzymes [BR:
ccw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120412271 (TRIM28)
Protein kinases [BR:
ccw01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
120412271 (TRIM28)
Ubiquitin system [BR:
ccw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120412271 (TRIM28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_5
zf-RING_UBOX
zf-C3HC4
zf-RING_2
DDE_Tnp_IS240
GemA
Motif
Other DBs
NCBI-GeneID:
120412271
NCBI-ProteinID:
XP_039428588
LinkDB
All DBs
Position
Unknown
AA seq
834 aa
AA seq
DB search
MSVPLPVAVGNGPGATGAEPPEPLELLELCGACRERLSPQREPRLLPCLHSVCRGCLGAA
PGAAGSDGQVFGCPVCHQQCPLGDIMENFFLQDSGAGPALGQGSRQCVPCPQSCTSCEDN
AAATSFCLECAEPLCETCVEAHQRVRYTRDHTVRALGGAVPRAGAAQCPVHPAEPLELFC
STCDTLTCRDCHLGTHRDHQSQFLEDAVREQRSVLAALVQRLGDKHAVLQRSTKELRGFI
RRVTDVQKRVQVEVKMAILQIMKELNKRGKVLVSDAQRVTEGQQEKLEQQHQAMSKVQRQ
QEHVLRFAARALGSPHSTALLLSRRLIHSQLLRALRVIVEPVEPQGDMKFQWDLHAWTKS
AESFGTIISEHPLPPSLSPPPSLSPPPAASPRNPSPASQGPPQATVVSGGQVTPELLLQE
QEPPWTPPCGAEGPECPPELSPPHLDPQLTETPELATSPPENTITGVRRRKPGNSPREEK
FVKKLLIKRRGPPGAQGSPLLPKVPRVSLERLELDLELDPAQPPVFRIFPGPSAEEFSVI
VIEQGTPGTAGTAGTAGTAGTAGTAQPHGALRVKVSDPRLHPVSTVPLPTQEEQQESPIG
DTGDTGDTKPVGLLPPPPGELGPATGSSPGPGLPVVPAVPGMPVIPGMLGVSCCRVCGQA
GAVVMCDRCQRCFHLHCHLPALQDVPSPEWTCLLCQELPPPSLDVEQGPPHKMSPLDQQK
CEYVLLELLCHEPCRPLQRLSSSPDSRDAIDLTLMRARLQEKLSPHYRSPEEFAXDGWRL
LRQFHQLTEDKADVQSILGLQRFLESRLSTVFGDQKFSRLLVDPEESLELSPGC
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgccgctgccggtggcggtcgggaacggccccggggcgacgggagcggagccg
ccggagcccctggagctgctggagctctgcggcgcctgccgggagcggctcagcccccag
cgggaaccgcggttgctgccttgcctgcactccgtgtgccggggttgcctcggggccgcg
ccgggagccgccggcagcgacgggcaggtgtttggctgccctgtgtgccaccagcagtgt
cccctcggtgacatcatggagaacttcttcctgcaggacagcggggctgggccagccctc
ggccagggcagcaggcagtgtgtcccttgtccccagagctgcaccagctgtgaggacaac
gcagcggccaccagcttctgcctggagtgcgcggagccgctgtgtgagacctgcgtggag
gcccatcagagggtcaggtacacccgggaccacaccgtgcgggccttgggcggggcggtg
ccgcgggccggggccgcgcagtgcccggtgcaccctgcggagccgctggagctgttctgc
agcacgtgtgacaccctcacgtgccgggactgtcacctgggcacccaccgcgaccaccag
tctcagttcctggaggacgcggtgcgggagcagcgctcggtgctggcggcgctggtgcag
cgcctgggggacaaacacgccgtgctgcagcgctccaccaaggagctgcgtggcttcatc
cggcgggtgacggacgtgcagaagcgggtgcaggtggaggtgaagatggccatcctgcag
atcatgaaggagctcaacaagcgcggcaaggtgctggtcagcgacgcccagcgggtgacc
gaggggcagcaggagaagctggagcagcagcaccaggccatgagcaaagtgcagcggcag
caggagcacgtcctgcgcttcgcggcgcgcgccctcggcagcccccacagcaccgccctg
ctgctctccaggaggctgatccactcgcagctgctccgggcgcttcgggtcatcgtggag
cctgtggagccccagggggacatgaaattccagtgggacctgcacgcctggaccaagagc
gccgagagctttggcaccatcatttcggagcatcccctccccccctcgctgagccccccg
ccctcgctgagccccccccctgctgccagcccccggaacccctcccccgcctcacagggc
cccccccaggccacggtggtgagtgggggacaggtgacccccgagctgctcctgcaggag
caggagcccccctggacccctccctgtggggccgaggggccggaatgtccccccgagctg
tcccccccccacctggacccgcagctgaccgagacccccgagctggccaccagcccccct
gaaaacaccatcactggagtgaggaggaggaaacccgggaattctcccagggaggagaag
ttcgttaagaagctgctcattaagcggaggggcccccccggggcccagggcagccccctg
ctcccgaaggtgccgcgggtgagcctggagcgcctggagctggacctggagctggacccg
gcccagccacccgtgttccgcatcttcccggggccctcggccgaggagttcagcgtcatc
gtcatcgagcaggggacgccggggacagcagggacagcggggacggcggggacggcgggg
acagcggggacggcgcagccacatggagccctccgcgtcaaggtgagcgacccccgtctc
catccagtgtccactgtccccctccccacccaggaggagcagcaggaatcgcccatcggg
gacaccggggacactggggacaccaaacccgtggggctgctcccccctcccccgggggag
ctgggccctgccacaggatcctccccgggcccggggctcccggtggtcccggcggtccca
gggatgccggtgatcccaggaatgctgggggtctcgtgctgccgcgtgtgcggccaggcg
ggggccgtggtgatgtgcgaccgctgccagcgctgcttccacctgcactgccacctgcct
gccctgcaggatgtgcccagccccgagtggacgtgtttgctgtgccaggagctgcccccg
cccagcctggacgtggagcagggacccccccacaaaatgagccccctggaccagcagaag
tgcgagtacgtcctgctggagctgctgtgccacgagccctgccggcccctccagcgcctc
tccagctccccggacagccgggacgccatcgacctgacgctgatgcgggcgcggctccag
gagaagctgagcccccactaccggagccccgaggagttcgccncggacggctggcggctg
ctccggcaattccatcagctcaccgaggacaaggcagacgttcagtccatcctggggctc
cagcgtttcctcgagagccgcctcagcactgtctttggagaccaaaagttctcgcggctc
ctggtggatcccgaggaatccctggagctgtccccaggatgctga
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integrated database retrieval system
