Corallococcus coralloides: COCOR_00963
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Entry
COCOR_00963 CDS
T01780
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccx
Corallococcus coralloides
Pathway
ccx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
COCOR_00963 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccx03400
]
COCOR_00963 (mfd)
Enzymes [BR:
ccx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
COCOR_00963 (mfd)
DNA repair and recombination proteins [BR:
ccx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
COCOR_00963 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFE09408
UniProt:
H8MLI1
LinkDB
All DBs
Position
complement(1159524..1163108)
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AA seq
1194 aa
AA seq
DB search
MDTSLPPKTDGTSWPGGAPPPSGDAFARLLASLRAGHRARTQGVKGAARGHLLARLHREL
RAPLVCVAVDEEAADALAHDLAFFLGGTGSLLEPRVLRLPADEVLPYDELSPEAGPITER
LGALFHLARGTPFPALVLSLRALHRRVLPLGVMEGLAQRVEVGQDFDRDSLARKLALMGY
QNSPLVEDKGTFSVRGGLLDVFSPLYERPVRLEFFGDTIESIRVFDPESQRTVDALKTVD
LVPARELLLTDDTRPRAEAAARAVADRINLPTIKLRERLDALREGLPGFGLEGLLPGFFE
GGLASVFDYLRAWAPEPVVYLDDPVGLDRALEELSAELAKGVAEADARQDLTYPPEHHFL
TREGVAEGLKALRVVEGGGLSLTQSEVPVAFTFGTTQDLREAILAHHGEEGALTPLVERL
QRWRDTGVACAVACGTLSQADRLKRLLLDRSVMVKVHTEPLQDPAKLYEPAVWAHLFTGE
VSHGFIDPEGRLAVLADEEIFGVRSRRRVKRSKKLDAFAAGFKDLKEGDLIVHTDFGIGR
YAGLTKMEVQGVPGDFLVLEYAGRDKIYLPVGRMRLIQKFTGGDPEKVQLDKLGTTSWEK
TKKRVKEQLLKMAAELLQMAAARKAHPGYAFAPPDRYFAQFEADFEFDETPDQAKAIEDV
LADMQKAQPMDRLVCGDVGYGKTEVAMRAAFKATLDRKQVAVLVPTTVLAQQHFHSFKKR
FKDYPVTVEVISGIRKPPEIRDILRRAKEGKVDIVIGTHKLLAGEVAFKDLGLLVVDEEQ
RFGVKQKEALKRLRTQVDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMK
YDEAVIKEAVDREIARGGQVFFVHNRVESLPSMEQELKKLLPNVSIGVAHGQMGEGQLEK
VMLQFTEHKFQVLLCTSIIESGIDISSANTMIVNRADQFGLAQLYQLRGRVGRSKERAYA
YLLVPTRRPVTKDAQRRLEVLQNFTELGAGFSIASHDLEIRGAGNLLGEKQSGAIAEIGF
DLYAQLMEEAVAELQGQPPKVHVEPDINLPMPALIPDDYVADVHQRLVFYKRFSQASHPD
EVTDLRAELVDRYGEAPDEVDALSEVTLLKIDMRELRLRALEGGPARLSLALGGDALLDG
AKVAALVQRSKGFYRLTPDMKLIARVPPEVKGHALLAEAHKLLRDVGTCALPRH
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggatacctctctccccccgaagaccgacggcacgtcctggcccggcggcgctccccct
ccctccggtgatgccttcgcccggctcctcgcctccctgcgcgcagggcaccgcgcgcgg
acgcagggggtgaagggcgcggcgcgtggccacctgcttgcccgcctgcaccgcgagctg
cgcgcgcccctggtgtgcgtggccgtggatgaagaagcggcggacgcgctcgcgcacgac
ctggccttcttcctgggaggcaccggcagcctgctggagcctcgcgtgctgcggctgccc
gcggacgaggtgctcccgtacgacgagctgtcgccggaggcaggccccatcacggagcga
ctgggcgcgctgttccacctggcgcgcggcacgcccttccccgcgctggtgctgtccctg
cgcgcgctgcaccgccgcgtgctgcccctgggagtgatggaggggctggcccagcgcgtg
gaggtaggccaggacttcgaccgcgactcgctggcgcggaagctggcgctgatgggctac
cagaacagcccattggtggaggacaagggcaccttcagcgtgcgcggcggcctgctggac
gtcttcagcccgctgtacgagcggccggtgcgcctggagttcttcggggacaccatcgag
tccatccgcgtcttcgacccggagtcgcagcgcacggtggacgcgctcaagacggtggac
ctggtgcccgcgcgcgagctgctgctcaccgacgacacccgcccgcgcgccgaggccgcc
gcccgcgcggtggcggaccgcatcaacctgcccaccatcaagctgcgcgagcggctggac
gcgctccgcgaagggctgcccggctttggcctggagggcctgctgcccggcttcttcgag
ggcgggctggcgtcggtgttcgactacctgcgcgcgtgggctccggagcccgtcgtctac
ctggacgacccggtgggcctggaccgcgcgctggaggaactgtccgcggagctggcgaag
ggcgtggcggaggcggacgcgcgccaggacctcacctatccgccggagcaccacttcctc
acgcgcgagggtgtggcggaggggctcaaggccctgcgcgtggtggagggcggaggcctg
tcgctcacgcagtccgaagtgcccgtggccttcaccttcggcacgacgcaggacctgcgc
gaggccatcctcgcgcaccacggtgaggagggcgcgctcaccccgctggtggagcggctg
cagcgctggcgcgacaccggcgtggcctgcgcggtggcgtgcggcacgctcagccaggcg
gaccggctgaagcggctgctgctggaccgctccgtgatggtgaaggtgcacacggagccc
ctgcaggacccggcgaagctctacgagccggcggtgtgggcgcacctgttcaccggcgag
gtgagccacggcttcatcgacccggaaggccggctggcggtgctggcggacgaggagatc
ttcggcgtccgctcccgccgccgcgtcaagcgcagcaagaagctggatgcgttcgccgcg
ggcttcaaggacctgaaggaaggcgacctcatcgtccacaccgacttcggcatcgggcgc
tacgcgggcctgacgaagatggaggtgcagggcgtgccgggggacttcctcgtcctggag
tacgcggggcgggacaagatctatctgccggtgggccgcatgcggctcatccagaagttc
accggcggcgacccggagaaggtccagctggacaagctgggcacgacgagctgggagaag
acgaagaagcgcgtcaaggagcagctgctcaagatggcggcggagctcctgcagatggcc
gccgcgcgcaaggcgcacccgggctatgcgttcgcgccgccggaccgctacttcgcccaa
ttcgaggcggacttcgagttcgacgagacgccggaccaggcgaaggccatcgaggacgtg
ctcgcggacatgcagaaggcgcagccgatggaccggctcgtctgcggcgacgtgggctac
ggcaagacggaggtggcgatgcgcgccgccttcaaggccacgttggaccgcaagcaggtg
gcggtgctggtgcccaccacggtgctggcgcagcagcacttccactccttcaagaagcgc
ttcaaggactaccccgtcacggtggaagtgatctccggcatccgcaagccgccggagatc
cgcgacatcctccgccgcgccaaggagggcaaggtcgacatcgtcatcggcacgcacaag
cttttggcgggcgaggtggccttcaaggacctggggctcctggtggtggacgaggagcag
cgcttcggcgtgaagcagaaggaggcgctcaagcggctgcgcacgcaggtggacgtgctg
acgctgacggcgacgcccatcccccgcacgctgcacatgagcatgtccggcgtgcgcgac
atgagcatcatcgccacgccgccgcaggaccgccgggccatccgcaccttcgtgatgaag
tacgacgaggccgtcatcaaggaggccgtggaccgagaaatcgctcgcggtggtcaggtc
ttcttcgtgcacaaccgcgtggagtccctgccgtccatggagcaggagctgaagaagctc
ctgccgaacgtctccatcggcgtggcgcacggccagatgggcgaggggcagctggagaag
gtgatgctccagttcacggagcacaagttccaggtgctcctgtgcaccagcatcatcgag
agcggcatcgacatctccagcgccaacacgatgatcgtcaaccgcgcggaccagttcggt
ctggcgcagctctaccagctgcgcggacgcgtgggacgcagcaaggagcgcgcgtacgcg
tacctgctggtgcccacccgccgtccggtgacgaaggacgcgcagcggcgcctggaggtg
ctccagaacttcacggagctgggcgcgggcttctccatcgccagccacgacctggagatc
cgcggcgcgggcaacctgctgggcgagaagcagtccggcgccatcgcggagattggcttc
gacctgtacgcgcagctgatggaggaggccgtcgcggagctccagggccagccgcccaag
gtgcacgtggagccggacatcaacctgcccatgccggcgctcatccccgacgactacgtg
gcggacgtgcaccagcggctggtgttctacaagcgcttcagccaggccagccacccggac
gaggtgacggacctgcgcgcggagctggtggaccgctacggcgaggcgcccgacgaggtg
gacgccctctccgaggtgacgctgctcaagatcgacatgcgcgagctgcggctgcgcgcg
ctggagggaggcccggcccggctgtcgctggcgctgggcggcgacgcgctcctggacggc
gcgaaggtggcggcgctggtgcagcgctccaagggcttctaccggctgacgccggacatg
aagctcatcgcccgcgtgcccccggaggtgaaggggcatgccctgctggcggaggcgcac
aagctgctgcgcgacgtgggcacctgcgcgctgccccggcactga
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