Corallococcus coralloides: COCOR_02104
Help
Entry
COCOR_02104 CDS
T01780
Symbol
helD
Name
(GenBank) putative helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ccx
Corallococcus coralloides
Pathway
ccx03420
Nucleotide excision repair
ccx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
COCOR_02104 (helD)
03430 Mismatch repair
COCOR_02104 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccx03400
]
COCOR_02104 (helD)
Enzymes [BR:
ccx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
COCOR_02104 (helD)
DNA repair and recombination proteins [BR:
ccx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
COCOR_02104 (helD)
MMR (mismatch excision repair)
Other MMR factors
COCOR_02104 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C_2
UvrD_C
UvrD-helicase
AAA_19
AAA_12
AAA_25
AAA_30
DEAD
Trigger_C
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AFE09026
UniProt:
H8MJ04
LinkDB
All DBs
Position
complement(2522376..2524511)
Genome browser
AA seq
711 aa
AA seq
DB search
MAGQEQELSPEALALIAEEEALLSRVQQALAEARRQAAERTLDTQGLMAQLAVLRDDATT
AHAADLPHVFTQMNEVRSMLERQEAVPLPDAHAPYFAHLRLSGPTGARDYLLGRTSFANL
SAGVRVIDWRFAPVARVFYNYEEGDAFEEYFGDRLSEGEVEARRLVIIEKGVLTRISTGP
YLLQRDSHGRWHSRGRDAASVLAGGSGTAARPGFLGVGRGETHVEDAFGVTALLDAEQYA
AVSTGPEQPLLVLGSAGSGKTTVALHRLAKVVFDDAKTFPQARTKVVVPEEGLARLTRRL
LAPLGLGKVSVETLEAWSLATARSAFSVPGIKLSPDTPALVSRFKRHPALRRALAGRVPV
FKGKALPPTLDRLRIKLADAYMDRAFLEAVVADAKGELPRTVVAEVMEHTRQQTATPLSR
QYKGFDEDRLVTVDGRAIEADTPDALAGTVDADDLPVLMFLKAQRGALGAERLAHVVLDE
AEDFSLFELFVVSQLLGDSRSCTLAGDEVQQTTAGFAGWDAALDELGIRDAATCRLQVSY
RCPRPVVELAQHVLGTQSPATAAKAGREGAPVGFHHFPDEAQAWLFLGDALRDLVLREPH
ASVGVIASSREAAQSFHRVIREMPWARLVLEGDFSFEPGVDVTDVDNVKGLEFDYVVLPD
VTARAYPADDEARRRLHVAVTRSSHQLWVASSAVRSPLIRTFPGADALSQG
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggccggccaggagcaggagctgtcgcccgaggcgctcgcgctcatcgccgaggaagag
gccctgctgtcacgcgtccagcaggcgctggcggaggcgcgccgtcaggccgcggaacgc
acgctggacacgcaggggctgatggcccagctggcggtgctgcgcgatgacgccaccacg
gcgcacgccgcggacctgccgcacgtcttcacccagatgaacgaggtgcgctccatgctg
gagcggcaggaggccgtcccgctgccggacgcgcacgccccctacttcgcgcacctgcgc
ctgtccgggcccacgggcgcgcgcgactacctgctcggccgcaccagcttcgccaacctc
tccgctggcgtgcgcgtcatcgactggaggttcgcccccgtcgcccgcgtcttctacaac
tacgaggagggcgacgcgttcgaggagtacttcggcgaccggctctccgaaggcgaagtg
gaggcgcgccggctggtcatcatcgagaagggcgtcctcacccgcatcagcaccggcccc
tacctgctccagcgcgactcacacggccgctggcactcgcgcggccgtgacgcggcctcc
gtgctcgcgggcggcagcggcaccgccgcgcggccgggcttcctgggcgtgggccggggc
gaaacccacgtggaggacgccttcggcgtgacggcgctcctggacgcggagcagtacgcc
gccgtcagcaccggcccggagcagccgctgctggtgctgggcagcgcgggcagcggcaag
acgacggtggcgctgcaccggctggccaaggtcgtcttcgacgacgcgaagacattcccg
caggcgcgcaccaaggtcgtcgtcccggaggagggcctggcccggctcacgcgccggctg
ctcgcgccgctgggcctgggcaaggtgtccgtggagacgctggaggcctggtcgctggcc
accgcgagaagcgccttcagcgtgccgggcatcaagctgtccccggacacgcccgcgctc
gtctcgcgcttcaagcgccaccccgccctgcgccgcgcgctggccggccgcgtgcccgtg
ttcaagggcaaggcgctgccccccacgctggaccggctgcgcatcaagctggcggacgcg
tacatggaccgcgccttcctggaggccgtggtggcggacgcgaagggagagctgccgcgc
accgtggtggcggaggtgatggagcacacccggcagcagaccgccacgccgctgtcgcgc
cagtacaagggcttcgacgaggaccggctcgtcaccgtggacgggcgcgcgattgaagcg
gacacgccggacgcgctcgcgggcaccgtggacgcggacgacctgcccgtcctcatgttc
ctcaaggcgcagcggggcgccctgggcgcggagcggctcgcccacgtggtgctggacgag
gcggaggacttctccctcttcgagctcttcgtcgtcagccagctgctcggagacagccgc
agctgcacgctcgccggggacgaggtgcaacagacgacggcgggcttcgccggctgggac
gccgccctggacgagctgggcatccgcgacgccgccacctgccggctccaggtgtcctac
cgctgcccgcgcccggtggtggagctggcgcagcacgtcctgggcacccagtcccccgcc
accgccgcgaaggctggccgcgagggcgcccccgtgggcttccaccacttccccgacgag
gcccaggcgtggctcttcctgggagacgccctgcgcgacctggtgctgcgtgagccgcac
gcgtcggtgggcgtcatcgccagcagccgcgaggccgcccagtccttccaccgcgtcatc
cgggagatgccctgggcgcggctggtgctggagggcgacttctccttcgagcccggcgtg
gacgtgacggacgtggacaacgtgaagggcctggagttcgactacgtcgtcctgccggac
gtcaccgcgcgcgcctaccccgcggacgacgaggcccgccgcaggctgcacgtggccgtc
acccgctcctcccaccagctgtgggtggcctcctccgccgtgcgctccccgctcatccgc
accttccccggcgcggacgcgttgagtcagggctga
DBGET
integrated database retrieval system
