Corallococcus coralloides: COCOR_02304
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Entry
COCOR_02304 CDS
T01780
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ccx
Corallococcus coralloides
Pathway
ccx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ccx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
COCOR_02304 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccx03021
]
COCOR_02304 (rpoD)
Transcription machinery [BR:
ccx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
COCOR_02304 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_ner
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AFE10230
UniProt:
H8MN05
LinkDB
All DBs
Position
complement(2772745..2774865)
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AA seq
706 aa
AA seq
DB search
MPTQKPPKASVKPTKKKVDPVIRKKKAPDSPAAKVTKAAEPEEKELLAKDAPAEAPEKIK
KKKGVAAMADDVDPEEAAEEAAAAVQVDPDAVEDDVEEDPVAERKEVKDLLAAGREKGFL
TYDEVNDALPADIVSSDQIDDVMSMFGDNDIEIVDAQKAAQSNEIKPTVAVEEEKEDQDE
DEKDEDDEPGGKSNDPVRLYLRKMGSVSLLTREGEVEIAKRIEEGEKEVLRALLACRVAV
ADILDISNRLKTGKLRVRDVIKDAPEEAQSENAEEPAEEAAEGEAPAQLAQSELNKIEQI
SKQIERFRKFAKDCEVLEEELSGKKKLTEVRKKELKQEVKDLRTKMMEVLEEMRLNKKQV
DRIVLNLKGLIERVEKAEEELGDLERRYQVNMKDLRPQLKESRENPNIAKKLQKQLNFTP
EQLEVLDRDVRTAVRKIKRVEEEANLPVDALRRNYDAIRLGEKRAERAKSELVEANLRLV
VSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIAEKMELPLDKVRKVLKIAKEPISL
ETPIGEEEDSHLGDFIEDKSLVSPADAVINMNLAEQTRKVLATLTPREEKVLRMRFGIGE
KSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLRSFVES
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgcagaagccccccaaggcatccgtgaagcccaccaagaagaaggtggacccg
gtgatccgcaagaagaaggccccggacagccctgcggcgaaggtcacgaaggcagcggag
cctgaggagaaggagctgctggcgaaggacgcccccgccgaggcgcccgagaagatcaag
aagaagaagggcgtcgccgccatggccgacgacgtggaccccgaggaggccgcggaggaa
gccgccgccgccgtccaggtggacccggacgccgtggaagacgacgtggaggaggatccc
gtcgccgagcgcaaggaggtcaaggacctgctggccgcgggccgcgagaagggcttcctc
acctatgacgaggtgaacgacgccctccccgccgacatcgtgtcgtccgatcagatcgac
gacgtgatgagcatgttcggcgacaacgacatcgagatcgtggacgcgcagaaggccgcg
cagtccaacgagatcaagcccaccgtcgcggtcgaggaggagaaggaagaccaggacgag
gacgagaaggacgaggacgacgagccgggcggcaagtccaacgatcctgtccggctctac
ctgcgcaagatgggcagcgtcagcctcctcacccgcgagggcgaggtggagatcgccaag
cgcatcgaagagggcgagaaggaagtcctgcgcgcgctgctcgcctgccgcgtcgcggtg
gcggacatcctggacatcagcaaccgcctgaagacgggcaagctgcgcgtgcgcgacgtc
atcaaggacgcgcccgaagaggcccagtcggagaacgcggaagagcccgccgaggaggca
gccgagggcgaggcccccgcgcagctggcgcagagcgagctcaacaagatcgagcagatc
tccaagcagatcgagcgcttccgcaagttcgccaaggactgcgaggtcctggaggaggag
ctctccgggaagaagaagctcacggaggtgcgcaagaaggagctgaagcaggaggtgaag
gaccttcggaccaagatgatggaggtcctggaggagatgcggctgaacaagaagcaggtg
gaccgcatcgtcctgaacctcaagggcctcatcgagcgcgtggagaaggcggaggaggag
ctcggggacctggagcgtcgctaccaggtcaacatgaaggacctgcgccctcagctgaag
gagtcgcgcgagaacccgaacatcgccaagaagctccagaagcagctcaacttcaccccg
gagcagctggaggtcctggaccgcgacgtgcgcacggcggtgcggaagatcaagcgcgtg
gaggaggaagccaacctccccgtggacgcgctccgccgcaactacgacgccatccgcctg
ggtgagaagcgcgccgagcgcgccaagagcgagctggtggaggcgaacctgcgcctcgtg
gtctccatcgcgaagaagtacacgaaccgcggcctgcagttcctggacctcatccaggag
ggcaacatcggcctgatgaaggcggtggacaagttcgagtacaagcgcggctacaagttc
tcgacgtacgccacctggtggatccgtcaggccatcacccgcgccatcgcggaccaggcc
cgcaccatccgcatcccggtgcacatgatcgagaccatcaacaagctcatccgcacgagc
cgctacctcgtgcaggagattggccgcgagccgacgccggaagagatcgcggagaagatg
gagctgccgctcgacaaggtgcgcaaggtcctgaagatcgccaaggagcccatctccctg
gagacgcccattggcgaggaagaggacagccacctgggcgacttcatcgaggacaagagc
ctggtgtcgcccgcggacgcggtcatcaacatgaacctggccgagcagacccggaaggtg
ctcgccacgctcacgccgcgcgaggagaaggtcctgcgcatgcgcttcggcattggcgag
aagagcgaccacacgctggaagaggtgggccaggacttcgaggtgacgcgcgagcgcatc
cgccagattgaagccaaggcgctgcgcaagctgcgccaccccagccgctccaagcgcctg
cgctccttcgtggagagctaa
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