Corallococcus coralloides: COCOR_02425
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Entry
COCOR_02425 CDS
T01780
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
ccx
Corallococcus coralloides
Pathway
ccx00300
Lysine biosynthesis
ccx00470
D-Amino acid metabolism
ccx01100
Metabolic pathways
ccx01110
Biosynthesis of secondary metabolites
ccx01120
Microbial metabolism in diverse environments
ccx01230
Biosynthesis of amino acids
Module
ccx_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
ccx00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
COCOR_02425 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
COCOR_02425 (dapF)
Enzymes [BR:
ccx01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
COCOR_02425 (dapF)
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Paralog
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Motif
Pfam:
DAP_epimerase
CntK_N
Motif
Other DBs
NCBI-ProteinID:
AFE08523
UniProt:
H8MPH8
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Position
2936543..2937394
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AA seq
283 aa
AA seq
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MDASERIFKYHGLGNDFVVLDRRRTGVDIDAEQSRWLCDRRRGIGADGVLAILPSSRGLA
RMVVHNADGSIAEMCGNGLRCAVKYLVDHSGQHPALIDVETGAGVLTCEPGYGDGGVVGV
DISMGPARLVAANLPSGTTGQPFVGAPVPGHEGLLGTAVNMGNPHLVLLDQPLEAAERLG
PGLERHPAFPDRTNVEFVRVDEDGLTVVVWERGCGLTQACGTGACASAVAAVLAKRLPSN
AWLRVTLPGGDLRIRVPDDLSDIRLRGPVAFVFEGVVALPRAR
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
gtggacgcaagcgaacgcatcttcaagtaccacggcctgggcaacgacttcgtcgtcctg
gaccggcgccgcaccggcgtggacatcgacgcggagcagtcccgctggctgtgcgaccgg
cgccggggcatcggcgcggacggggtgctcgccatcctcccgtcgtcccgcggccttgcc
cgcatggtcgtccacaacgccgacggcagcatcgcggagatgtgcggcaacggcctgcgc
tgtgcggtgaagtatctggtggaccactccggccagcaccccgcgctcatcgacgtggag
accggggccggcgtcctcacctgcgagcccggctacggcgatggcggcgtcgtcggcgtg
gacatctccatgggcccggcccggctggtggccgcgaacctgccctccgggacgaccggc
cagcccttcgtgggcgcccccgtgcccggccatgagggtctgctcggcaccgcggtgaac
atgggcaacccgcacctggtgctcctggaccagcccctggaggccgccgagcgcctgggc
cccggcctggagcggcaccccgccttcccggaccgcaccaacgtggagttcgtccgcgtg
gacgaggacggcctcaccgtcgtcgtctgggagcgcggctgcggcctcacccaggcctgt
gggacgggcgcgtgtgcgtccgccgtggcggccgtgctggcgaagcgcctgccctcgaat
gcctggctgcgcgtcacgctgccgggcggcgacctgagaatccgcgttccggacgacctg
tccgacatccggctccgaggccccgtggccttcgtcttcgaaggcgttgtcgcgcttcca
agggcccgatag
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