Corallococcus coralloides: COCOR_02472
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Entry
COCOR_02472 CDS
T01780
Symbol
rtcR
Name
(GenBank) sigma-54 dependent transcription regulator
KO
K14414
transcriptional regulatory protein RtcR
Organism
ccx
Corallococcus coralloides
Brite
KEGG Orthology (KO) [BR:
ccx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccx03000
]
COCOR_02472 (rtcR)
Transcription factors [BR:
ccx03000
]
Prokaryotic type
Other transcription factors
Others
COCOR_02472 (rtcR)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
Mg_chelatase
AAA
AAA_22
AAA_16
NACHT
AAA_2
AAA_19
AAA_7
T2SSE
AAA_30
TsaE
ATPase_2
MCM
ABC_tran
NTPase_1
AAA_29
AAA_14
TniB
Motif
Other DBs
NCBI-ProteinID:
AFE10285
UniProt:
H8MQS2
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All DBs
Position
complement(2986082..2987713)
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AA seq
543 aa
AA seq
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MAQKAKARRTVVIGMLGTTLDTGVGSQRWVRWRPTVSLCQQEDLLVHRLELLHPPHGTSL
AAVIRDDIAQVSPETEVRLTSLPIRDPWNLEETYGALLDHVRASSFHPEEEDYLVHITTG
THIAQICMFLLVESRLIPGRLVQTSPGKGKDHGAVGTHAIIDLDLSNYDTLAARFRQQQR
EGLSFLKSGIDTRNAAFNRIIERIEQVAVQSRAPLLLTGPTGAGKSQLAKRIYALKKARN
QVTGPFVDLNCATLRGDGAMSTLFGHVKGAFTGAVGDRPGLMRQANGGVLFLDEIGELGA
DEQAMLLRALEDKRFLPVGADKEAESDFQLIAGTNRDLQLDVAQGRFREDLLARINLWTF
RLPALRERPEDIAPNLQYELDQASQTLGTRVTMSKEAQEHFLRFATSPEGRWSGNFRDLN
AAVLRMSTLAAGGRMTRDVVDEELDRLRSQWRPAGAAMTSAGEDVLVEVMGAARAAELDR
FDRVQLADVVTVCRSARSLSDAGRMLFAQSRAQKKSVNDADRLRKYLARFGLAWADVSGR
DAE
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaaaggcgaaggcacggcggacggtcgtcatcgggatgctggggacgacactg
gacacgggggtggggtcgcagcgctgggtgcggtggcggcccacggtgtcgctgtgtcag
caggaggacctgctggtgcaccggctggagctgctgcacccgccccatgggacgtcgctg
gcggcggtcatccgggacgacatcgcgcaggtgtcgccggagacggaggtgcggctcacg
tcactgcccatccgggatccgtggaacctggaggagacgtacggcgcgctcctggaccac
gtgcgcgcgagctccttccatccggaggaagaggactacctggtgcacatcaccacgggc
acgcacatcgcgcagatctgcatgttcctcctcgtggagagccggctgattccgggccgg
ttggtgcagacgtccccgggcaaggggaaggaccacggggcggtgggcacgcacgccatc
atcgacctggacctgtcgaactacgacacgctggcggcgcgcttccggcaacagcaacgc
gaaggcctgtcattcctcaagtccggcatcgacacgcgcaacgccgccttcaaccggatc
atcgagcggattgaacaggtggcggtgcagtcccgagcccccctgctgctgacaggcccc
acgggcgcgggcaagtcacagctcgcgaagcgcatctacgcgctgaagaaggcgcgcaac
caggtgacggggccgttcgtggatttgaactgcgccacgctgcgcggtgacggcgccatg
tccacgctcttcggccacgtgaagggcgcgttcacgggcgcggtgggagacaggcccgga
ctgatgcggcaggcgaacggcggcgtgctgttcctggacgagattggagagctgggcgcg
gacgaacaggccatgttgctgcgagccctggaggacaagcgcttcctgccggtgggcgcg
gacaaggaggcggagagcgacttccagctcatcgcgggaacaaaccgcgacctccagctg
gacgtggcgcagggacggtttcgcgaggacctgctcgcgcgcatcaacctgtggacgttc
cggctgcccgcgctgcgcgagcgtccggaggacattgcccccaacctgcaatacgaactg
gatcaggcgtcgcagacgctggggacgcgggtgacgatgagcaaggaggcccaggagcac
ttcctgcgcttcgccacgtcccctgaaggccggtggagcggcaacttccgggacctcaac
gcggcggtgctgcgcatgtccacgctcgcggccggcgggcggatgacgcgcgacgtggtg
gacgaggagctggaccgcctgcgttcgcagtggcgacccgcgggcgcggcgatgacgtca
gcgggtgaggacgtcctggtggaggtgatgggcgcggcacgggcggcggagctggaccgg
ttcgaccgcgtgcagctcgcggacgtggtgacggtgtgccgctccgcgcgctcgttgtcg
gacgcgggccggatgttgttcgcgcagtcacgcgcgcagaagaagagcgtcaacgacgcg
gaccgcctccgaaagtacctggcgcgcttcgggctggcgtgggccgacgtgagtggtcgc
gacgcggagtga
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