Corallococcus coralloides: COCOR_02475
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Entry
COCOR_02475 CDS
T01780
Symbol
fpgX
Name
(GenBank) formamidopyrimidine DNA-glyxosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ccx
Corallococcus coralloides
Pathway
ccx03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ccx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
COCOR_02475 (fpgX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccx03400
]
COCOR_02475 (fpgX)
Enzymes [BR:
ccx01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
COCOR_02475 (fpgX)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
COCOR_02475 (fpgX)
DNA repair and recombination proteins [BR:
ccx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
COCOR_02475 (fpgX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
Zn_ribbon_IS1595
Auto_anti-p27
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AFE08815
UniProt:
H8MQS5
LinkDB
All DBs
Position
2990430..2991287
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AA seq
285 aa
AA seq
DB search
MAEVPEVEIIVRDLKQAVVGRRFVGAEVLMPAAVRFAAPPDFIQNLQGRKVLAAERRAKF
MLLTLDDGQTLALHFMLWGELQLRPAGSERPPETLVVLTLEGNEELQLTDTLGYARVALG
PTALLASQLKLEELGPEALDETFTPEVLAKQLRRRRSPLKTVLLNQRVLAGLGNRDADES
LWVAGIDPRRLASSLSPAEIVRLHQGIRDVLEEGLRLRGTQRDLFGVQGQAKHRRNIFGK
TGAPCPRCATPVSHLRIGGRNTHWCAHCQPADGASTEAPAQTSLL
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
gtggcggaagtccctgaagtcgaaatcatcgtccgagacctgaagcaggccgtcgtgggc
cggcgcttcgtgggcgcggaggtgctgatgcccgcggcggtgcgcttcgccgcgccgccg
gacttcatccagaacctccagggccgcaaggtgctcgcggcggagcggcgcgcgaagttc
atgctgctcacgctggatgacgggcagacgctcgcgctgcatttcatgctctggggggag
ttgcagctgcggcccgctggaagcgaacggcctcccgagacgctcgtggtcctcacgctg
gaggggaacgaagagctccagctcacggacacgctgggctacgcgcgcgtggcgctgggg
cccacggcgctgctggcctcgcagctcaagctggaggagctgggaccggaggcgctcgat
gagacgttcactccggaggtcctggcgaagcagcttcgccgcaggcgcagtccgctcaag
acggtgctcctgaaccagcgcgtgctcgcggggctgggcaaccgcgacgcggacgagagc
ctgtgggtcgcgggcatcgacccccggcggctggcgtcgtccctgtctcccgctgaaatc
gtccggctgcaccagggcatccgcgacgtgctggaagaagggctgcggctgcgcggcacg
cagcgcgacctgttcggcgtgcaggggcaggcgaagcaccggcgcaacatcttcggcaag
acgggggcgccgtgtccccgctgcgccacgcccgtgtctcacctgcgcatcggcggccgc
aacacgcactggtgtgcgcactgccagcccgcggacggcgcctcgacggaggccccggcg
cagacgtcactgctctga
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