Corallococcus coralloides: COCOR_04652
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Entry
COCOR_04652 CDS
T01780
Symbol
pcrA2
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ccx
Corallococcus coralloides
Pathway
ccx03420
Nucleotide excision repair
ccx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
COCOR_04652 (pcrA2)
03430 Mismatch repair
COCOR_04652 (pcrA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccx03400
]
COCOR_04652 (pcrA2)
Enzymes [BR:
ccx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
COCOR_04652 (pcrA2)
DNA repair and recombination proteins [BR:
ccx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
COCOR_04652 (pcrA2)
MMR (mismatch excision repair)
Other MMR factors
COCOR_04652 (pcrA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
AFE09766
UniProt:
H8MJC2
LinkDB
All DBs
Position
complement(5872717..5874777)
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AA seq
686 aa
AA seq
DB search
MAAPLPLIHAVPAGAPSRRLDLDGALNDEQRAAVEAGEGPVLVIAGAGSGKTRTLTYRVA
RMLERGVPPSSLLLLTFTNKAAREMIRRVEELAGGFADVGSLLGGTFHHAAHVLLRQHAA
ALGFSTGFTVLDREDARDLMATCLAERKLRSDKRFPRPDALLDLVSLATNLQQPVSQVLV
DRRREMLPVAPEVFATARRFQQRKAQLHLMDYDDLLSHLKRLLEDHPSIRAELTGRFQGV
LVDEYQDTNRLQGDLVDLLVGERKNLTVVGDDCQSIYSFRGAEFTNIIDFPQRYPGCGIY
PLTRNYRSTPQVLRLANAVIARNTRQFPKALVSDGAPGPVPQVVPTRDVKAQAAFVAERV
LELRARGERLESMAVLYRAHLHSLELQLELTRHGIPFRVRSGVRFFEQAHVKDALAHLRW
AHNRADELAFKRLARRLSGVGTASTEHLWTALAVLPPELSLPDALAHPDVQAHVPKKAQA
GFQRFQALMTRLSSGGTRSPGALLAEVLAAREPPATPGGADPRGEDLRQLQEFAGRFEDV
PRFLSAIALVAEFSARAALEGDGEAPDDVLTLTTVHQAKGLEWPTVFVLGLTDGRFPLSL
ATRDPENEEEERRLFYVAVTRAREALWLVYPHTSLPREDGRLLLTPSRFLAELPVGPDAV
CETLPPPEPDGPIRLRDLGPDPDREL
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggccgcccccctgccgctgatccacgccgtccccgccggagcgccctcgcgccgtctg
gacctggatggcgcgctcaacgacgagcagcgcgcggccgtcgaagcaggggaggggccc
gtgctcgtgattgccggggcgggctctggcaagacgcgcacgctcacgtaccgcgtggcg
cgcatgctggagcggggcgtcccgccgtcgtcactgctgctgctcacgttcaccaacaag
gccgcgcgcgagatgatccgccgcgtggaggagctggccggcggcttcgcggacgtgggc
agtctcctgggcggcaccttccaccacgcggcgcacgtgctcctgcgccagcacgcggcg
gcgctgggcttctccaccggcttcaccgtactggaccgcgaggacgcgcgcgacctgatg
gccacgtgcctggcggagcggaagctgcgcagcgacaagcgcttcccgcgtccggacgcg
ctgttggacctggtctccctggccaccaacctccagcagccggtgtcgcaggtgctggtg
gaccggcgcagggagatgcttcccgtggccccggaggtgttcgccaccgcgcgccgcttc
cagcagcgcaaggcgcagctgcacctgatggactacgacgacctgctgtcgcacctgaag
cggctcttggaggaccacccgtccatccgcgcggagctcaccgggcgcttccagggcgtg
ctcgtggacgagtaccaggacacgaaccgcctccagggcgacctcgtggacctgctcgtg
ggtgagcgcaagaacctcaccgtcgtgggcgacgactgccagtccatctacagcttccgc
ggcgcggagttcaccaacatcatcgacttcccccagcgctatcccggctgcggcatctac
ccgctcacgcgcaactaccgctccacgccccaggtgctgcggctggccaacgccgtcatc
gcgcgcaacacccgtcagttccccaaggcgctcgtgtccgacggcgcccccggccccgtg
ccccaggtggtgcccacccgcgacgtgaaggcccaggccgccttcgtcgccgagcgcgtc
ctggagctgcgcgcccggggtgagcgtctggagtccatggcggtgctctaccgcgcccac
ctgcactccctggagcttcagctggagctgacgcgccacgggattccgttccgcgtgcgc
tccggggtgcgtttcttcgagcaggcccacgtcaaggacgcgctcgcccacctgcgatgg
gcgcacaaccgggccgacgagctggccttcaagcggctcgcgcggaggctctccggtgtg
ggcaccgccagcacggaacacctgtggaccgccctggccgtgctgcccccggagttgtcc
ctcccggacgcgctggcccacccggacgtccaggcccacgtgccgaaaaaggcgcaggcc
ggcttccagcgcttccaggccctgatgacgaggctgtcctccggaggcactcgaagcccg
ggtgcgctgctcgcggaggtgctggcagctcgcgagcccccggccactccgggtggggcg
gacccccgcggggaggacctgcgccagctccaggagttcgccggccgcttcgaggacgtg
ccccgcttcctgtccgccatcgccctggtggccgagttctccgcccgggccgccctggag
ggcgacggcgaggccccggacgacgtgctcaccctcaccacggtgcaccaggccaagggg
ctggagtggccgaccgtcttcgtcctgggcctcaccgacgggcgcttccccctgtcgctc
gccacgcgcgaccctgagaacgaggaggaggagcgccgcctcttctatgtcgccgtcacc
cgggcccgggaggcgctgtggctcgtgtacccccacacctcgctgccccgggaggacgga
cggctcctgctcaccccgtcccgcttcctggccgagctgccggtgggtcctgacgcggtg
tgtgagaccctcccgcccccggagcccgacgggccgatccgcctgcgcgacctggggccg
gatcccgaccgggagctgtag
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