Corallococcus coralloides: COCOR_05253
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Entry
COCOR_05253 CDS
T01780
Symbol
yhaM
Name
(GenBank) OB-fold nucleic acid binding domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
ccx
Corallococcus coralloides
Brite
KEGG Orthology (KO) [BR:
ccx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccx03019
]
COCOR_05253 (yhaM)
Messenger RNA biogenesis [BR:
ccx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
COCOR_05253 (yhaM)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_anti-codon
HD
tRNA_anti_2
RMI2
TraI_2
Motif
Other DBs
NCBI-ProteinID:
AFE10971
UniProt:
H8MUC8
LinkDB
All DBs
Position
6624376..6625896
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AA seq
506 aa
AA seq
DB search
MTTENESQAATSSTPEASVETVRKVYAADLREKDRVNTVFRVTKKEKVNARSGKVFLSLS
LADKSGTVDARVFDKVDALEPVFQNGDYVLVQGSVIVFHGRTQVVVEAVERLDPEPLDPK
EFEPPPAPPAEAKAESKAGEAKSGDAKAESKSGEAKSGEAKSGDAKQAEGKSERHEGGGG
GPRAVGQIRELVTERVNDPFVKQLLLAFLDDAQVSSALPVAPAAKGVHHAWRGGLAEHVL
SVMRLTLRVSDHYPMADRDLLLAGAFLHDVMKGGDGASDKGFDTSDEGRLVGHAVLAAQK
IREKTLGIPGFPPLLEQHLTHLAISQSGASGAPGAKVPVTLEAQIVDTLSSLDARISSWV
EAMQRDPNERWTDHLRAYDRSLWKGFVPTGRGRAPVEGGRRKHREEKRKARADKGPPSQA
GEGSPPAPASQEARPERPPRPPREPRAERPPREDRGPREERPARPPREDRPPRDPKSLPG
ELTFKPFSALAPAPKSGGEGGGSSEG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccgaaaacgagtcccaggccgcgacctcttccaccccggaggcttccgtcgag
accgtccgcaaggtgtacgcggcggacctgcgcgagaaggaccgggtcaacaccgtcttc
cgcgtcaccaagaaggagaaggtgaacgcgcgcagcggcaaggtgttcctgtcgctgtcc
ctggccgacaagagcggcacggtggacgcgcgcgtcttcgacaaggtggacgcgctcgaa
cccgtcttccagaacggtgactacgtcctcgtgcagggcagcgtcatcgtcttccacggc
cgcacccaggtcgtcgtggaggccgtggagcggctggatccggagccgctcgaccccaag
gagttcgagccgccccctgccccgcccgccgaggcgaaggccgagtccaaggccggcgaa
gcgaagtccggcgacgcgaaggccgagtccaagtccggcgaagcgaagtccggcgaagcg
aagtccggcgacgcgaagcaggcagagggcaagtccgagcgccacgagggcggcggcggt
ggcccgcgcgcggtggggcagatccgcgagctcgtcaccgagcgcgtcaacgacccgttc
gtgaagcagctgctgctggcgttcctggacgacgcgcaggtgtcctcggcgctgccggtg
gctcctgccgccaagggcgtgcaccacgcgtggcgcggcgggctggccgagcacgtcctg
tcggtgatgcgcctgacgctgcgcgtgtcggatcactaccccatggcggaccgcgacctg
ctcctggccggcgcgttcctgcacgacgtgatgaagggcggcgacggggcgtccgacaag
ggcttcgacacctccgacgagggccggctggtgggccacgcggtgctggccgcgcagaag
atccgcgagaagaccctgggcatcccgggcttcccgccgctcctggagcagcacctgacg
cacctggcgatctcccagtcgggggcgtccggcgctcccggcgccaaggtgccggtgacg
ctggaggcgcagatcgtcgacacgctcagctcgctcgacgcgcgcatctcctcgtgggtg
gaggccatgcagcgcgatccgaacgagcgctggacggaccacctgcgcgcgtacgaccgc
tccctctggaagggcttcgtgcccaccggtcgtggcagagctccggtggagggtggccgc
cgcaagcaccgcgaggagaagcgcaaggcgcgcgccgacaagggcccgccgtcccaggct
ggcgagggcagcccccccgcccccgcgtcccaggaggcccgtccggagcgtccgccgcgg
cctccccgcgagccccgcgccgagcgtccgccgcgtgaggaccggggtccccgcgaggag
cgccccgcccgtccgccgcgcgaggaccgtccgccccgcgaccccaagagcctgcccggc
gagctgaccttcaagccgttcagcgcgctggcgccggccccgaagtccggtggtgagggt
ggtggctcctcggagggctga
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