Corallococcus coralloides: COCOR_05544
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Entry
COCOR_05544 CDS
T01780
Symbol
pcnB
Name
(GenBank) poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
ccx
Corallococcus coralloides
Pathway
ccx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCOR_05544 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccx03019
]
COCOR_05544 (pcnB)
Enzymes [BR:
ccx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
COCOR_05544 (pcnB)
Messenger RNA biogenesis [BR:
ccx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
COCOR_05544 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_RNAbd
PolyA_pol_arg_C
Motif
Other DBs
NCBI-ProteinID:
AFE09760
UniProt:
H8N0N9
LinkDB
All DBs
Position
complement(6970130..6971842)
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AA seq
570 aa
AA seq
DB search
MSSPLDLTGSEERTERTEAQVPADSAEHPSEHETPSRADPAPSEPPFAADAAEDDGFDDD
DDAEDAGPEVSDEIRAATEALKAAEAEDAQAAAEAGDEAEEPEAVILEPEPEPASNEPEL
QAPTTTRTGEPAEIDPDEMDPDALKVVLRLHQHGHQAYLVGGCVRDLLLGKKPKDFDVAT
SAHPGEVRAIFRNCRLIGRRFRLAHVYFKGGKIVEVSTFRANPTELEPAAGAEEGQSGED
LLITHDNVFGTAQQDARRRDFTINGLFYDASEGRVIDYVRGRRDLDERFIRTIGDPEIRM
REDPVRILRAVRFAAKLDLDIESRTYAAMEGAVEDLPRCAPARLLEETFRLIRGGVSAPA
LKLLAALDALKILLPPVDAYLRENGKEGEKTFYAFAQALDKRVSAGEVLDDAILLAALLV
PISRAQPPVEESQDEGRASVSRVIEDLLAGFVESARLPRRIAERCRMLLLMQRTLSGERR
RKTGAFRRHPLFNEALAVYAMTVEATGEGREALEAWQAGEVPPPRAGAAGGADAEGPRRK
RRRRRRRRSGSGSGEGGGAGASSGSDAGEG
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcccccctggacctgacgggctccgaggagcgcaccgagcgcaccgaggcccag
gtgcccgcggactccgccgagcaccccagcgaacacgaaaccccttcccgggccgacccg
gccccttccgagcccccctttgccgcggacgccgcggaggacgacgggttcgatgacgat
gacgacgccgaggacgccggccccgaggtcagtgacgaaatccgggccgccaccgaggcc
ctgaaggccgcggaggcggaggacgcgcaggccgccgccgaggcgggtgacgaagccgag
gagcccgaggccgtcatcctggagcccgagccggagcccgcctcgaacgagccggagctg
caggcgcccaccaccacccgcacgggcgagcccgcggagatcgacccggacgagatggat
ccggacgcgctcaaggtggtgctgcggctgcaccagcacggccaccaggcgtacctggtg
ggtggctgcgtgcgcgacctgctcttgggcaagaagcccaaggacttcgacgtggccacc
agcgcccacccgggcgaggtgcgcgccatcttccgcaactgccggcttatcggccggcgc
ttccggctggcgcacgtctacttcaagggcgggaagatcgtggaggtgtccaccttccgc
gcgaaccccacggagctggagccggcggcgggggcggaggaggggcagagcggcgaggac
ctcctcatcacgcacgacaacgtctttggcaccgcgcagcaggacgcgcgccgccgcgac
ttcaccatcaacggcctgttctacgacgcgagcgaaggccgggtcatcgactacgtgcgc
ggccggcgcgacctggatgagcgcttcatccggacgattggcgacccggaaatccgcatg
cgcgaggacccggtgcgcatcctgcgcgcggtgcgcttcgcggcgaagctggacctggac
atcgagtcgcgcacgtacgcggcgatggagggcgcggtggaggacctgccgcgctgcgcg
cccgcgcgcctgctggaggagacgttccggctcatccgcggcggtgtgtccgccccggcg
ctgaagctgctggcggcgctggacgcgctgaagattctgctgccgcccgtggacgcgtac
ctgcgtgagaacggcaaggaaggggagaagaccttctacgccttcgcgcaggcgctggat
aagcgcgtgtcggcgggagaggtgctggacgacgccatcctgctggccgcgttgctggtg
cccatcagccgcgcgcagccgccggtggaggagtcccaggacgagggccgtgcgtcggtg
tcgcgcgtcatcgaggacctgctggcggggttcgtggagtcggcgaggctgccgcgccgc
atcgccgagcgctgccgcatgctgctgctgatgcagcgcacgctgtccggggagcgccgc
cgcaagacgggcgccttccgccgccatccgctcttcaacgaggcgctggccgtctacgcg
atgacggtggaggccacgggcgagggccgcgaggcgctggaggcctggcaggccggagag
gtgccgccgccgcgcgctggagcagccggcggtgcggacgcggaaggcccccgccgcaag
cgccgtcgccgccgtcgccgccgttccggcagcgggagcggagagggtggcggcgcggga
gcctcctctggctccgacgcgggcgaggggtag
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