Corallococcus coralloides: COCOR_05772
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Entry
COCOR_05772 CDS
T01780
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
ccx
Corallococcus coralloides
Brite
KEGG Orthology (KO) [BR:
ccx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccx03009
]
COCOR_05772 (dbpA)
Enzymes [BR:
ccx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
COCOR_05772 (dbpA)
Ribosome biogenesis [BR:
ccx03009
]
Prokaryotic type
rRNA helicases
COCOR_05772 (dbpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
CMS1
ResIII
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AFE08524
UniProt:
H8MFP2
LinkDB
All DBs
Position
complement(7268132..7269517)
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AA seq
461 aa
AA seq
DB search
MEFSALALSPPLLQVLEELEFKTATPIQAQSIPVLLQGKDLVGQARTGSGKTAAFALPIL
QKVKLTQDRRLQALVLCPTRELCAQVAGEIRRLARRMPGVQVLALAGGSPIRPQVEALEK
GVHIGVGTPGRIMDLLDREVLDTRHLATVVLDEADRMLDMGFREDMERVLGATPAKRQTV
LFSATFPDDIEKLSRAFQKDPVRVSLAQEEAAPDIQQVGYACTPEEKQALLLRLLRQHQP
ASAIVFCNFKAVVVELTRALVQAGVSADGLQGDLEQFDRDRVMAKFRNHSTRVLVATDVA
GRGIDVEALDAVVNYELPQQPEAYVHRIGRTGRAGRRGLALSLVTRSDSRKVEDIEATTG
VKLEKGDVDALVPENVPGVSLISGWETLSISAGRKDKMRPGDILGALTGEAGGLKAEDVG
KIEIHDHHAFVAVSKRVVKVAFQRLSEGRIKGRRHRIERVR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggaattctccgcgctcgcgctgtcgcccccgctgctccaggtgctggaggagctggag
ttcaagaccgccacccccatccaggcgcagagcatcccggtgctgttgcagggaaaggac
ctggtgggccaggcgcgcacgggcagcgggaagacggcggcgttcgcgctgcccatcctg
cagaaggtgaagctcacgcaggaccggcggctccaggcgctggtgctctgccccacgcgt
gaattgtgcgcgcaggtggcgggagagattcgccggctggcgcggcggatgccgggtgtg
caggtgctggcgctcgcgggagggtcgcccatccggccgcaggtggaggcgctggagaag
ggtgtgcacatcggcgtggggacgcccgggcgcatcatggacctgctggaccgggaggtg
ctggacacgcggcacctggccacggtcgtgctggatgaggcggaccggatgctggacatg
ggcttccgggaggacatggagcgggtgctcggggcgacgcccgcgaagcggcagacggtg
ctcttctccgcgacgttcccggacgacatcgagaagctgagccgcgcgttccagaaggac
ccggtgcgggtgtcgctggcgcaggaggaggccgcgccggacatccagcaggtggggtac
gcgtgcacgccggaggagaagcaggcgctgctgctgcggctgttgcgccagcaccagccg
gcctccgccatcgtgttctgcaacttcaaggcggtggtggtggagctgacgcgcgcgctg
gtgcaggcgggcgtgagcgcggacgggttgcagggcgacctggagcagttcgaccgggac
cgggtgatggcgaagttccgcaatcacagcacgcgcgtgctggtggcgacggacgtggcg
ggccggggcatcgacgtggaggcgctggacgcggtggtgaactacgaactgccgcagcag
ccggaagcgtacgtgcatcgcattggccgcacggggcgcgcgggccgtcgcgggctggcg
ctgtcgctggtgacgcgctcggacagccgcaaggtggaggacatcgaagcgacgacgggc
gtgaagctggagaagggagacgtggacgcgctggtgccggagaacgtgccgggcgtgtcg
ctcatctccggttgggagacgctgtccatctccgcggggcgcaaggacaagatgcggccc
ggagacatcctgggcgcgctgacgggcgaggcgggcggcctcaaggcggaggacgtgggc
aagattgaaatccacgaccatcacgccttcgtcgccgtctccaagcgcgtggtgaaggtc
gcgttccagcggctgagcgaaggccgcatcaagggccgccggcaccgcatcgaacgcgtg
cggtag
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