Corallococcus coralloides: COCOR_06018
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Entry
COCOR_06018 CDS
T01780
Symbol
pnpA
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ccx
Corallococcus coralloides
Pathway
ccx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCOR_06018 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccx03019
]
COCOR_06018 (pnpA)
03016 Transfer RNA biogenesis [BR:
ccx03016
]
COCOR_06018 (pnpA)
Enzymes [BR:
ccx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
COCOR_06018 (pnpA)
Messenger RNA biogenesis [BR:
ccx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
COCOR_06018 (pnpA)
Transfer RNA biogenesis [BR:
ccx03016
]
Prokaryotic type
tRNA degradation factors
COCOR_06018 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AFE09938
UniProt:
H8MKY5
LinkDB
All DBs
Position
complement(7592131..7594287)
Genome browser
AA seq
718 aa
AA seq
DB search
MLKKSVKIGENELSIETGRLAKQADGSVVVRYGDTMLLVTAVSAREKKDVDFLPLTVEYQ
EKLYSAGRIPGSYFKREGRLTEKETLASRLVDRSCRPLFPEGYAYETQVIASVISADPEN
EGDIHGITGASAALWVSDIPFNGPIAGIRVGRVGGQFVANPTAKQREQSDLDLVMAVSRE
AIVMVEGGAEEVSEADMVAALEFGRQNAQPALDLQDQLRTELKKQVRSYEKPATIDEGLR
NQVRELALEGVKAGYAIKEKGARYEALSKVKKAAIAALKEKLGAEFTPQVEKHAKQVIED
LKYDHMRELTVNGGRIGDRPHNVVRSITNEVGVLPRTHGSAVFTRGETQALVVVTLGTSE
DEQRLELLSGQAFKRFMLHYNFPPFSVNETKPLRGPGRREVGHGALAERALRNMIPASDS
FPYTVRLVSEILESNGSSSMASVCGGTLALMDAGVPIKAPVAGIAMGLVKEGEKIAILSD
ILGDEDHLGDMDFKVCGTSKGITSIQMDIKITGLTTEIMSRALEQARQGREHILAEMAKT
LSAPRKEISQFAPRITTIQIRPEFIKNVIGPGGKVIKDIIARTGAAINIEDTGRVDIASA
NGEAVKAAIAMIQALTREAEIGKIYTGTVRKIAEFGAFVELFPGTDGLIHISELSDKRVK
SVSDVLSEGDEVLVKVVSIDKTGKIRLSRKEAMAERANAQGTPPAAAAPAAPTPDAKA
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagaagagcgtcaagattggtgagaacgagctgagcatcgagacgggccgcctg
gccaagcaggccgacggttccgtggtggtccgctacggcgacaccatgctgctcgtcacc
gcggtgagcgcgcgggagaagaaggacgtcgacttcctccccctcacggtggagtaccag
gagaagctgtactcggcgggccgcatcccgggcagctacttcaagcgcgagggccgtctg
acggagaaggagacgctggcctcccgtctggtggaccgctcctgccgtccgctgttcccg
gaaggctacgcctacgagacgcaggtcatcgcgtccgtcatctccgcggacccggagaac
gagggtgacatccacggcatcaccggcgcctccgcggcgctgtgggtgtcggacatcccg
ttcaacggccccatcgcgggcatccgcgtgggccgcgtgggcggccagttcgtggcgaac
cccaccgcgaagcagcgcgagcagagcgacctggacctcgtcatggcggtgagccgcgag
gccatcgtgatggtggagggtggcgcggaggaggtcagcgaggcggacatggtggcggcg
ctggagttcggccgtcagaacgcccagcccgcgctggacctgcaggaccagctgcgcacg
gagctgaagaagcaggtccgctcctacgagaagcccgccaccatcgacgagggcctgcgc
aaccaggtccgcgagctggcgctggagggcgtgaaggccggctacgccatcaaggagaag
ggcgcgcgctacgaggcgctctccaaggtgaagaaggccgccatcgcggcgctcaaggag
aagctgggcgcggagttcaccccgcaggtggagaagcacgccaagcaggtcatcgaggac
ctgaagtacgaccacatgcgtgagctcaccgtgaacggtggccgcatcggtgaccgtccg
cacaacgtggtgcgctccatcaccaacgaggtgggcgtgctgccccgcacgcacggcagc
gcggtgttcacccgcggcgagacgcaggcgctcgtggtcgtcacgctgggcaccagcgag
gacgagcagcggctggagctgctcagcggccaggccttcaagcggttcatgctgcactac
aacttcccgccgttcagcgtgaacgagaccaagcccctgcgcggccccggccgtcgcgag
gtcggtcacggcgccctggcggagcgcgcgctgcgcaacatgattccggccagcgactcg
ttcccgtacacggtgcgtctggtgtcggagatcctcgagtccaacggctcgtcctccatg
gcctccgtgtgcggtggcacgctggcgctgatggacgcgggcgtgcccatcaaggcgccg
gtggcgggcatcgccatgggcctggtgaaggagggcgagaagatcgccatcctgtccgac
atcctgggtgacgaggatcacctgggcgacatggacttcaaggtctgcggcacgtccaag
ggcatcacgtccatccagatggacatcaagatcaccggcctcaccacggagatcatgagc
cgcgcgctggagcaggcgcgtcagggccgcgagcacatcctggcggagatggcgaagacg
ctgagcgcgccgcgcaaggagatcagccagttcgcgccgcgcatcacgaccatccagatc
cgtccggagttcatcaagaacgtcatcgggccgggcggcaaggtgatcaaggacatcatc
gcccgcacgggtgccgccatcaacatcgaggacaccggccgcgtggacatcgccagcgcg
aacggcgaggcggtgaaggcggccatcgcgatgatccaggcgctcacgcgcgaggcggag
atcgggaagatctacaccggcaccgtccggaagatcgccgagttcggcgccttcgtggag
ctgttcccgggcaccgacggcctcatccacatctccgagctgtccgacaagcgcgtgaag
agcgtgtcggacgtgctgagcgagggtgacgaggtgctggtgaaggtcgtcagcatcgac
aagacgggcaagatccgcctgtcgcgcaaggaggccatggccgagcgcgccaacgcgcag
ggcacgcctcccgcggccgccgccccggccgccccgacgccggacgcgaaggcctga
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